FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0599, 192 aa 1>>>pF1KE0599 192 - 192 aa - 192 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4640+/-0.000703; mu= 8.5969+/- 0.043 mean_var=95.4620+/-19.167, 0's: 0 Z-trim(111.9): 10 B-trim: 0 in 0/51 Lambda= 0.131268 statistics sampled from 12739 (12744) to 12739 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.391), width: 16 Scan time: 2.060 The best scores are: opt bits E(32554) CCDS11914.1 INO80C gene_id:125476|Hs108|chr18 ( 192) 1260 247.9 2.8e-66 CCDS45853.1 INO80C gene_id:125476|Hs108|chr18 ( 228) 931 185.6 1.9e-47 CCDS77177.1 INO80C gene_id:125476|Hs108|chr18 ( 137) 913 182.1 1.3e-46 >>CCDS11914.1 INO80C gene_id:125476|Hs108|chr18 (192 aa) initn: 1260 init1: 1260 opt: 1260 Z-score: 1303.3 bits: 247.9 E(32554): 2.8e-66 Smith-Waterman score: 1260; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192) 10 20 30 40 50 60 pF1KE0 MAAQIPIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MAAQIPIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 ENKMVPSEFSTGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 ENKMVPSEFSTGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPW 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 QLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 QLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTG 130 140 150 160 170 180 190 pF1KE0 YLALRKATSIVP :::::::::::: CCDS11 YLALRKATSIVP 190 >>CCDS45853.1 INO80C gene_id:125476|Hs108|chr18 (228 aa) initn: 1246 init1: 931 opt: 931 Z-score: 965.5 bits: 185.6 E(32554): 1.9e-47 Smith-Waterman score: 1154; 83.9% identity (83.9% similar) in 224 aa overlap (5-192:5-228) 10 20 30 40 50 pF1KE0 MAAQIPIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQ-------- :::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MAAQIPIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQTCLSPSTM 10 20 30 40 50 60 60 70 80 pF1KE0 ----------------------------GISMEAMSENKMVPSEFSTGPVEKAAKPLPFK :::::::::::::::::::::::::::::::: CCDS45 IVRPPQPRGTTCLLPSAMIVRPPQPRGNGISMEAMSENKMVPSEFSTGPVEKAAKPLPFK 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE0 DPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 DPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSD 130 140 150 160 170 180 150 160 170 180 190 pF1KE0 VSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKATSIVP :::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 VSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKATSIVP 190 200 210 220 >>CCDS77177.1 INO80C gene_id:125476|Hs108|chr18 (137 aa) initn: 913 init1: 913 opt: 913 Z-score: 950.4 bits: 182.1 E(32554): 1.3e-46 Smith-Waterman score: 913; 100.0% identity (100.0% similar) in 137 aa overlap (56-192:1-137) 30 40 50 60 70 80 pF1KE0 SPSHNGSSGGGYGASKKKKASASSFAQGISMEAMSENKMVPSEFSTGPVEKAAKPLPFKD :::::::::::::::::::::::::::::: CCDS77 MEAMSENKMVPSEFSTGPVEKAAKPLPFKD 10 20 30 90 100 110 120 130 140 pF1KE0 PNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 PNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSDV 40 50 60 70 80 90 150 160 170 180 190 pF1KE0 SGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKATSIVP ::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 SGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKATSIVP 100 110 120 130 192 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:41:54 2016 done: Sun Nov 6 13:41:54 2016 Total Scan time: 2.060 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]