Result of FASTA (omim) for
pFN21AE1582
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1582, 89 aa
1>>>pF1KE1582 89 - 89 aa - 89 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8077+/-0.000263; mu= 11.5192+/- 0.016
mean_var=56.2043+/-11.165, 0's: 0 Z-trim(120.3): 70 B-trim: 116 in 1/53
Lambda= 0.171076
statistics sampled from 35289 (35362) to 35289 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.415), width: 16
Scan time: 3.860
The best scores are: opt bits E(85289)
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 616 158.9 9.8e-40
NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 375 99.4 8.1e-22
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 371 98.5 1.6e-21
NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 371 98.5 1.6e-21
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 295 79.7 7.1e-16
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 283 76.7 5.5e-15
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is ( 93) 271 73.8 4.3e-14
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109) 267 72.8 9.8e-14
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- ( 87) 258 70.6 3.8e-13
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 246 67.6 3.1e-12
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 213 59.5 8.9e-10
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 213 59.5 8.9e-10
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 213 59.6 1.3e-09
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c ( 93) 206 57.7 2.9e-09
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr ( 93) 206 57.7 2.9e-09
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137) 207 58.1 3.4e-09
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 203 57.1 6e-09
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 203 57.1 6e-09
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 203 57.1 6e-09
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120) 203 57.1 6e-09
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113) 202 56.8 6.8e-09
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 197 55.5 1.4e-08
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120) 192 54.3 4e-08
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120) 192 54.3 4e-08
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 188 53.3 6.7e-08
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 176 50.4 5.2e-07
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 173 49.6 8.6e-07
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 172 49.4 1.3e-06
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 172 49.5 1.4e-06
NP_001278401 (OMIM: 610757) C-C motif chemokine 4- ( 96) 168 48.4 2e-06
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr ( 94) 165 47.6 3.3e-06
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr ( 98) 164 47.4 4e-06
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122) 165 47.7 4.1e-06
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123) 165 47.7 4.1e-06
NP_004582 (OMIM: 601960) C-C motif chemokine 20 is ( 96) 161 46.6 6.6e-06
NP_001278404 (OMIM: 610757) C-C motif chemokine 4- ( 103) 160 46.4 8.3e-06
NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 158 45.9 1.1e-05
NP_001278399 (OMIM: 610757) C-C motif chemokine 4- ( 64) 154 44.8 1.6e-05
NP_001278398 (OMIM: 610757) C-C motif chemokine 4- ( 64) 154 44.8 1.6e-05
NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 155 45.2 1.9e-05
NP_001278402 (OMIM: 610757) C-C motif chemokine 4- ( 86) 154 44.9 2e-05
NP_001278400 (OMIM: 610757) C-C motif chemokine 4- ( 103) 154 44.9 2.3e-05
NP_001123518 (OMIM: 601960) C-C motif chemokine 20 ( 95) 149 43.7 5.1e-05
NP_001265665 (OMIM: 187011) C-C motif chemokine 5 ( 154) 149 43.8 7.6e-05
NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre ( 96) 144 42.4 0.00012
NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397) 141 42.1 0.00065
NP_006410 (OMIM: 605149) C-X-C motif chemokine 13 ( 109) 130 39.0 0.0015
XP_006714126 (OMIM: 605149) PREDICTED: C-X-C motif ( 109) 130 39.0 0.0015
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114) 130 39.0 0.0015
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114) 130 39.0 0.0015
>>NP_002979 (OMIM: 603757) C-C motif chemokine 18 precur (89 aa)
initn: 616 init1: 616 opt: 616 Z-score: 834.4 bits: 158.9 E(85289): 9.8e-40
Smith-Waterman score: 616; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KE1 MKGLAAALLVLVCTMALCSCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPKPGVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MKGLAAALLVLVCTMALCSCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPKPGVI
10 20 30 40 50 60
70 80
pF1KE1 LLTKRGRQICADPNKKWVQKYISDLKLNA
:::::::::::::::::::::::::::::
NP_002 LLTKRGRQICADPNKKWVQKYISDLKLNA
70 80
>>NP_002974 (OMIM: 182283,609423) C-C motif chemokine 3 (92 aa)
initn: 387 init1: 319 opt: 375 Z-score: 512.7 bits: 99.4 E(85289): 8.1e-22
Smith-Waterman score: 375; 60.9% identity (81.5% similar) in 92 aa overlap (1-89:1-92)
10 20 30 40 50
pF1KE1 MKGLAAALLVLVCTMALC---SCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPKP
:. .::: ::.:::::: : . .. . ::. ::: ::::.::.:: ::: :: ::
NP_002 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKP
10 20 30 40 50 60
60 70 80
pF1KE1 GVILLTKRGRQICADPNKKWVQKYISDLKLNA
:::.::::.::.::::...:::::.:::.:.:
NP_002 GVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
70 80 90
>>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like (93 aa)
initn: 394 init1: 319 opt: 371 Z-score: 507.3 bits: 98.5 E(85289): 1.6e-21
Smith-Waterman score: 371; 60.2% identity (79.6% similar) in 93 aa overlap (1-89:1-93)
10 20 30 40 50
pF1KE1 MKGLAAALLVLVCTMALC----SCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPK
:. .::: ::.:::::: : .. . ::. ::: ::::.::.:: ::: :: :
NP_001 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
10 20 30 40 50 60
60 70 80
pF1KE1 PGVILLTKRGRQICADPNKKWVQKYISDLKLNA
:.::.:::::::.::::...:::::.:::.:.:
NP_001 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
70 80 90
>>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3- (93 aa)
initn: 394 init1: 319 opt: 371 Z-score: 507.3 bits: 98.5 E(85289): 1.6e-21
Smith-Waterman score: 371; 60.2% identity (79.6% similar) in 93 aa overlap (1-89:1-93)
10 20 30 40 50
pF1KE1 MKGLAAALLVLVCTMALC----SCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPK
:. .::: ::.:::::: : .. . ::. ::: ::::.::.:: ::: :: :
NP_066 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
10 20 30 40 50 60
60 70 80
pF1KE1 PGVILLTKRGRQICADPNKKWVQKYISDLKLNA
:.::.:::::::.::::...:::::.:::.:.:
NP_066 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
70 80 90
>>NP_996890 (OMIM: 603782) C-C motif chemokine 4-like pr (92 aa)
initn: 311 init1: 269 opt: 295 Z-score: 406.0 bits: 79.7 E(85289): 7.1e-16
Smith-Waterman score: 295; 45.7% identity (76.1% similar) in 92 aa overlap (1-88:1-92)
10 20 30 40 50
pF1KE1 MKGLAAALLVLVCTMALCS---CAQVGTNKEL-CCLVYTSWQIPQKFIVDYSETSPQCPK
:: ...: .:: . :.:: : .:.. ::. ::. ..:..:.::: ::: : .
NP_996 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
60 70 80
pF1KE1 PGVILLTKRGRQICADPNKKWVQKYISDLKLNA
:.:.. ::::.:.::::...:::.:. ::.::
NP_996 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN
70 80 90
>>NP_002975 (OMIM: 182284) C-C motif chemokine 4 precurs (92 aa)
initn: 295 init1: 261 opt: 283 Z-score: 390.0 bits: 76.7 E(85289): 5.5e-15
Smith-Waterman score: 283; 43.5% identity (76.1% similar) in 92 aa overlap (1-88:1-92)
10 20 30 40 50
pF1KE1 MKGLAAALLVLVCTMALCS---CAQVGTNKEL-CCLVYTSWQIPQKFIVDYSETSPQCPK
:: ...: .:. . :.:: : .:.. ::. ::. ..:..:.::: ::: : .
NP_002 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
60 70 80
pF1KE1 PGVILLTKRGRQICADPNKKWVQKYISDLKLNA
:.:.. :::..:.::::...:::.:. ::.::
NP_002 PAVVFQTKRSKQVCADPSESWVQEYVYDLELN
70 80 90
>>NP_116739 (OMIM: 601392) C-C motif chemokine 14 isofor (93 aa)
initn: 290 init1: 267 opt: 271 Z-score: 373.9 bits: 73.8 E(85289): 4.3e-14
Smith-Waterman score: 271; 41.9% identity (76.3% similar) in 93 aa overlap (1-88:1-93)
10 20 30 40 50
pF1KE1 MK-GLAAALLVLVCTMALCSCAQVGT----NKELCCLVYTSWQIPQKFIVDYSETSPQCP
:: ..:: . :. :.:: . .. .. . ::..::...::.. :.:: ::. ::
NP_116 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
10 20 30 40 50 60
60 70 80
pF1KE1 KPGVILLTKRGRQICADPNKKWVQKYISDLKLNA
:::....::::...:..:. :::: ::.:.: :
NP_116 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
70 80 90
>>NP_116738 (OMIM: 601392) C-C motif chemokine 14 isofor (109 aa)
initn: 290 init1: 267 opt: 267 Z-score: 367.6 bits: 72.8 E(85289): 9.8e-14
Smith-Waterman score: 267; 52.5% identity (88.1% similar) in 59 aa overlap (30-88:51-109)
10 20 30 40 50
pF1KE1 MKGLAAALLVLVCTMALCSCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPKPGV
::..::...::.. :.:: ::. :: :::.
NP_116 KTESSSQTGGKPKVVKIQLKLVGGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCSKPGI
30 40 50 60 70 80
60 70 80
pF1KE1 ILLTKRGRQICADPNKKWVQKYISDLKLNA
...::::...:..:. :::: ::.:.: :
NP_116 VFITKRGHSVCTNPSDKWVQDYIKDMKEN
90 100
>>NP_001278397 (OMIM: 610757) C-C motif chemokine 4-like (87 aa)
initn: 280 init1: 128 opt: 258 Z-score: 357.0 bits: 70.6 E(85289): 3.8e-13
Smith-Waterman score: 258; 42.4% identity (71.7% similar) in 92 aa overlap (1-88:1-87)
10 20 30 40 50
pF1KE1 MKGLAAALLVLVCTMALCS---CAQVGTNKEL-CCLVYTSWQIPQKFIVDYSETSPQCPK
:: ...: .:: . :.:: : .:.. ::. ::. ..:..:.::: ::: : .
NP_001 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
60 70 80
pF1KE1 PGVILLTKRGRQICADPNKKWVQKYISDLKLNA
:.:. :.:.::::...:::.:. ::.::
NP_001 PAVV-----GKQVCADPSESWVQEYVYDLELN
70 80
>>NP_002976 (OMIM: 187011) C-C motif chemokine 5 isoform (91 aa)
initn: 249 init1: 209 opt: 246 Z-score: 340.7 bits: 67.6 E(85289): 3.1e-12
Smith-Waterman score: 246; 38.5% identity (73.6% similar) in 91 aa overlap (1-88:1-91)
10 20 30 40 50
pF1KE1 MKGLAAALLVLVCTMALC---SCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPKP
:: :::: :.. . ::: : . ... ::..: . .:. : .: :: .: .:
NP_002 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNP
10 20 30 40 50 60
60 70 80
pF1KE1 GVILLTKRGRQICADPNKKWVQKYISDLKLNA
.:...:...::.::.:.::::..::..:...
NP_002 AVVFVTRKNRQVCANPEKKWVREYINSLEMS
70 80 90
89 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:52:26 2016 done: Sun Nov 6 13:52:27 2016
Total Scan time: 3.860 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]