FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1893, 422 aa 1>>>pF1KE1893 422 - 422 aa - 422 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0373+/-0.00105; mu= 13.1202+/- 0.063 mean_var=68.7748+/-13.139, 0's: 0 Z-trim(102.5): 24 B-trim: 0 in 0/51 Lambda= 0.154653 statistics sampled from 6951 (6959) to 6951 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.575), E-opt: 0.2 (0.214), width: 16 Scan time: 2.820 The best scores are: opt bits E(32554) CCDS11272.1 PSMD11 gene_id:5717|Hs108|chr17 ( 422) 2637 597.8 6.5e-171 CCDS32235.1 COPS2 gene_id:9318|Hs108|chr15 ( 443) 395 97.6 2.6e-20 CCDS45257.1 COPS2 gene_id:9318|Hs108|chr15 ( 450) 386 95.6 1.1e-19 >>CCDS11272.1 PSMD11 gene_id:5717|Hs108|chr17 (422 aa) initn: 2637 init1: 2637 opt: 2637 Z-score: 3182.0 bits: 597.8 E(32554): 6.5e-171 Smith-Waterman score: 2637; 100.0% identity (100.0% similar) in 422 aa overlap (1-422:1-422) 10 20 30 40 50 60 pF1KE1 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKK 370 380 390 400 410 420 pF1KE1 LT :: CCDS11 LT >>CCDS32235.1 COPS2 gene_id:9318|Hs108|chr15 (443 aa) initn: 302 init1: 229 opt: 395 Z-score: 478.2 bits: 97.6 E(32554): 2.6e-20 Smith-Waterman score: 395; 26.0% identity (57.9% similar) in 385 aa overlap (8-380:35-404) 10 20 30 pF1KE1 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQE .. ...: : .:... ...... . : CCDS32 EDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELE-GE 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE1 NDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLF- . : . .. .: : .: . . :: :.: ..... . . . :.:: . CCDS32 KGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIR---SAVTRNYSEKSINSILDYIS 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE1 LDMEAATGQEV-ELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR . . :: : :: .. ::... : ...: .::.. ..: . .. :: . CCDS32 TSKQMDLLQEFYETTLEALKDAKNDRLWF---KTNTKLGKLYLEREEYGKLQKILRQLHQ 130 140 150 160 170 160 170 180 190 200 pF1KE1 ELKKMDDK------ALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP-PKLQA . : . . :.:. :: . : : .: : .: .. .:: : : ... CCDS32 SCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAI--PHPLIMG 180 190 200 210 220 230 210 220 230 240 250 260 pF1KE1 TLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNT---PE .. .: .: .: ... :.. :.:::..:: ::. : :::..: ...... : CCDS32 VIRECGGKMHL-REGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPF 240 250 260 270 280 290 270 280 290 300 310 320 pF1KE1 DVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAK : : : . :. ...: .: ....::: : .... :::.: :. . CCDS32 DSQEAKPYK-----NDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEE 300 310 320 330 340 330 340 350 360 370 380 pF1KE1 LYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVL : :. : ::..:.:..:..: ::. .... :::: : : :::. .:: .:: CCDS32 LLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLL 350 360 370 380 390 400 390 400 410 420 pF1KE1 IIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT CCDS32 ELDHQKRGGARYTALDKWTNQLNSLNQAVVSKLA 410 420 430 440 >>CCDS45257.1 COPS2 gene_id:9318|Hs108|chr15 (450 aa) initn: 302 init1: 229 opt: 386 Z-score: 467.2 bits: 95.6 E(32554): 1.1e-19 Smith-Waterman score: 396; 26.5% identity (57.7% similar) in 388 aa overlap (4-380:49-411) 10 20 30 pF1KE1 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKR ::. ::.. : . : .. :....: CCDS45 EYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKI 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE1 DIQ-ENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSL ... : : .. .: . . : .... . ....: :. : :: .. : . CCDS45 NFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI-----STSKQNSDFLCQ-- 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE1 LDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQ .::. .. : :: .. ::... : ...: .::.. ..: . .. : CCDS45 MDLLQEF-------YETTLEALKDAKNDRLWF---KTNTKLGKLYLEREEYGKLQKILRQ 140 150 160 170 180 160 170 180 190 200 pF1KE1 LLRELKKMDDK------ALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP-PK : . . : . . :.:. :: . : : .: : .: .. .:: : : CCDS45 LHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAI--PHPL 190 200 210 220 230 210 220 230 240 250 260 pF1KE1 LQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNT-- ..... .: .: .: ... :.. :.:::..:: ::. : :::..: ...... CCDS45 IMGVIRECGGKMHL-REGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI 240 250 260 270 280 290 270 280 290 300 310 320 pF1KE1 -PEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTH : : : : . :. ...: .: ....::: : .... :::.: : CCDS45 NPFDSQEAKPYK-----NDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREH 300 310 320 330 340 350 330 340 350 360 370 380 pF1KE1 LAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGE . .: :. : ::..:.:..:..: ::. .... :::: : : :::. .:: .:: CCDS45 IEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVN 360 370 380 390 400 410 390 400 410 420 pF1KE1 GVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT CCDS45 QLLELDHQKRGGARYTALDKWTNQLNSLNQAVVSKLA 420 430 440 450 422 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:53:32 2016 done: Sun Nov 6 13:53:33 2016 Total Scan time: 2.820 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]