Result of FASTA (omim) for
pFN21AE1913
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1913, 450 aa
1>>>pF1KE1913 450 - 450 aa - 450 aa
Library: /omim/omim.rfq.tfa
64092750 residues in 91774 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5917+/-0.000367; mu= 16.4584+/- 0.023
mean_var=77.7414+/-15.377, 0's: 0 Z-trim(113.6): 113 B-trim: 374 in 2/53
Lambda= 0.145462
statistics sampled from 23698 (23819) to 23698 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.26), width: 16
Scan time: 4.230
The best scores are: opt bits E(91774)
NP_006077 (OMIM: 600638,602661,614039) tubulin bet ( 450) 3025 644.6 1.7e-184
NP_006079 (OMIM: 602660,617879) tubulin beta-4B ch ( 445) 2817 600.9 2.3e-171
NP_115914 (OMIM: 615103,617732) tubulin beta-6 cha ( 446) 2810 599.5 6.4e-171
NP_001290453 (OMIM: 615103,617732) tubulin beta-6 ( 446) 2810 599.5 6.4e-171
NP_821080 (OMIM: 610031,612850) tubulin beta-2B ch ( 445) 2808 599.1 8.5e-171
NP_821133 (OMIM: 156610,191130,615771) tubulin bet ( 444) 2793 595.9 7.5e-170
NP_001060 (OMIM: 615101,615763) tubulin beta-2A ch ( 445) 2793 595.9 7.5e-170
NP_006078 (OMIM: 128101,602662,612438) tubulin bet ( 444) 2787 594.7 1.8e-169
NP_001276058 (OMIM: 128101,602662,612438) tubulin ( 444) 2787 594.7 1.8e-169
NP_001276056 (OMIM: 128101,602662,612438) tubulin ( 489) 2787 594.7 1.9e-169
NP_001276052 (OMIM: 128101,602662,612438) tubulin ( 495) 2787 594.7 2e-169
NP_001280141 (OMIM: 156610,191130,615771) tubulin ( 464) 2668 569.7 6.2e-162
NP_817124 (OMIM: 616768,616780) tubulin beta-8 cha ( 444) 2634 562.5 8.3e-160
NP_001184110 (OMIM: 600638,602661,614039) tubulin ( 378) 2536 541.9 1.1e-153
NP_001280143 (OMIM: 156610,191130,615771) tubulin ( 400) 2447 523.3 5e-148
NP_110400 (OMIM: 612901,613112) tubulin beta-1 cha ( 451) 2437 521.2 2.4e-147
NP_001290456 (OMIM: 615103,617732) tubulin beta-6 ( 374) 2370 507.1 3.5e-143
NP_001276059 (OMIM: 128101,602662,612438) tubulin ( 372) 2351 503.1 5.5e-142
NP_001276060 (OMIM: 128101,602662,612438) tubulin ( 372) 2351 503.1 5.5e-142
NP_001280145 (OMIM: 156610,191130,615771) tubulin ( 372) 2347 502.3 9.8e-142
NP_001280144 (OMIM: 156610,191130,615771) tubulin ( 372) 2347 502.3 9.8e-142
XP_016883574 (OMIM: 612901,613112) tubulin beta-1 ( 429) 2283 488.9 1.2e-137
NP_001290457 (OMIM: 615103,617732) tubulin beta-6 ( 381) 2245 480.9 2.8e-135
XP_011517761 (OMIM: 616768,616780) tubulin beta-8 ( 372) 2243 480.4 3.6e-135
NP_001290455 (OMIM: 615103,617732) tubulin beta-6 ( 409) 2235 478.8 1.3e-134
NP_001297244 (OMIM: 615101,615763) tubulin beta-2A ( 360) 2221 475.8 8.7e-134
XP_016871682 (OMIM: 616768,616780) tubulin beta-8 ( 332) 1984 426.1 7.6e-119
XP_016871681 (OMIM: 616768,616780) tubulin beta-8 ( 332) 1984 426.1 7.6e-119
NP_001290459 (OMIM: 615103,617732) tubulin beta-6 ( 300) 1874 402.9 6.2e-112
NP_001290458 (OMIM: 615103,617732) tubulin beta-6 ( 300) 1874 402.9 6.2e-112
XP_011517762 (OMIM: 616768,616780) tubulin beta-8 ( 291) 1614 348.4 1.6e-95
NP_006073 (OMIM: 602530) tubulin alpha-1B chain [H ( 451) 1273 276.9 8e-74
NP_006000 (OMIM: 602529,611603) tubulin alpha-1A c ( 451) 1265 275.3 2.6e-73
NP_001257328 (OMIM: 602529,611603) tubulin alpha-1 ( 451) 1265 275.3 2.6e-73
NP_005991 (OMIM: 191110,616208) tubulin alpha-4A c ( 448) 1261 274.4 4.6e-73
NP_005992 (OMIM: 602528) tubulin alpha-3C chain [H ( 450) 1248 271.7 3e-72
NP_525125 (OMIM: 617878,617928) tubulin alpha-3D c ( 450) 1248 271.7 3e-72
NP_061816 (OMIM: 605742,613180) tubulin alpha-8 ch ( 449) 1239 269.8 1.1e-71
NP_001265481 (OMIM: 191110,616208) tubulin alpha-4 ( 433) 1209 263.5 8.6e-70
NP_001257329 (OMIM: 602529,611603) tubulin alpha-1 ( 416) 1169 255.1 2.8e-67
NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 ( 383) 1087 237.9 4e-62
NP_001061 (OMIM: 191135,615412) tubulin gamma-1 ch ( 451) 997 219.0 2.2e-56
NP_057521 (OMIM: 605785) tubulin gamma-2 chain iso ( 451) 987 216.9 9.4e-56
XP_024306672 (OMIM: 191135,615412) tubulin gamma-1 ( 538) 826 183.2 1.6e-45
XP_024306463 (OMIM: 605785) tubulin gamma-2 chain ( 587) 825 183.0 2e-45
XP_016860313 (OMIM: 191110,616208) tubulin alpha-4 ( 295) 779 173.1 9.2e-43
NP_001280142 (OMIM: 156610,191130,615771) tubulin ( 242) 777 172.7 1e-42
NP_001307438 (OMIM: 605785) tubulin gamma-2 chain ( 460) 629 141.8 3.9e-33
NP_001290454 (OMIM: 615103,617732) tubulin beta-6 ( 104) 569 128.8 7.3e-30
XP_024306467 (OMIM: 605785) tubulin gamma-2 chain ( 357) 536 122.2 2.4e-27
>>NP_006077 (OMIM: 600638,602661,614039) tubulin beta-3 (450 aa)
initn: 3025 init1: 3025 opt: 3025 Z-score: 3433.9 bits: 644.6 E(91774): 1.7e-184
Smith-Waterman score: 3025; 100.0% identity (100.0% similar) in 450 aa overlap (1-450:1-450)
10 20 30 40 50 60
pF1KE1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440 450
pF1KE1 EYQQYQDATAEEEGEMYEDDEEESEAQGPK
::::::::::::::::::::::::::::::
NP_006 EYQQYQDATAEEEGEMYEDDEEESEAQGPK
430 440 450
>>NP_006079 (OMIM: 602660,617879) tubulin beta-4B chain (445 aa)
initn: 2817 init1: 2817 opt: 2817 Z-score: 3198.1 bits: 600.9 E(91774): 2.3e-171
Smith-Waterman score: 2817; 93.2% identity (98.2% similar) in 443 aa overlap (1-443:1-443)
10 20 30 40 50 60
pF1KE1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV
::::::.:::::::::::::::::::::::::.:.: ::::::::::.::::::.. :::
NP_006 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV
:::.::::::::::::::: ::..::::::.:::::::::::::::::::::::::::::
NP_006 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV
::: :.::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_006 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL
::::::::.::::::::::::::::::::::::::::.:::::::::::::::::::: :
NP_006 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
::::::::::::::.:::::::::::::::: .:.:::::::::::::::.:::::::::
NP_006 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440 450
pF1KE1 EYQQYQDATAEEEGEMYEDDEEESEAQGPK
:::::::::::::::. :. :::
NP_006 EYQQYQDATAEEEGEFEEEAEEEVA
430 440
>>NP_115914 (OMIM: 615103,617732) tubulin beta-6 chain i (446 aa)
initn: 2810 init1: 2810 opt: 2810 Z-score: 3190.1 bits: 599.5 E(91774): 6.4e-171
Smith-Waterman score: 2810; 93.0% identity (98.4% similar) in 443 aa overlap (1-443:1-443)
10 20 30 40 50 60
pF1KE1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV
:::::::::::::::::.::::::::::::::.:.::::: ::::::.:::::.::.:::
NP_115 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV
::: ::::::::::::::: ::.:::::::::::.:::::::::::::::::::.:::::
NP_115 PRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDAVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV
:::::.::::::::::::::::::::::::::::.:::.::::::::::.::::::::::
NP_115 RKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVMPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL
::::::::.::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_115 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::.:::
NP_115 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDARNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
NP_115 AACDPRHGRYLTVATVFRGPMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
:::.:::::::::::::::::::::.:::::::::::.::::::::::::::::::::::
NP_115 LKMASTFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440 450
pF1KE1 EYQQYQDATAEEEGEMYEDDEEESEAQGPK
::::::::::.. : .::.:::
NP_115 EYQQYQDATANDGEEAFEDEEEEIDG
430 440
>>NP_001290453 (OMIM: 615103,617732) tubulin beta-6 chai (446 aa)
initn: 2810 init1: 2810 opt: 2810 Z-score: 3190.1 bits: 599.5 E(91774): 6.4e-171
Smith-Waterman score: 2810; 93.0% identity (98.4% similar) in 443 aa overlap (1-443:1-443)
10 20 30 40 50 60
pF1KE1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV
:::::::::::::::::.::::::::::::::.:.::::: ::::::.:::::.::.:::
NP_001 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV
::: ::::::::::::::: ::.:::::::::::.:::::::::::::::::::.:::::
NP_001 PRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDAVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV
:::::.::::::::::::::::::::::::::::.:::.::::::::::.::::::::::
NP_001 RKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVMPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL
::::::::.::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_001 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::.:::
NP_001 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDARNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
NP_001 AACDPRHGRYLTVATVFRGPMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
:::.:::::::::::::::::::::.:::::::::::.::::::::::::::::::::::
NP_001 LKMASTFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440 450
pF1KE1 EYQQYQDATAEEEGEMYEDDEEESEAQGPK
::::::::::.. : .::.:::
NP_001 EYQQYQDATANDGEEAFEDEEEEIDG
430 440
>>NP_821080 (OMIM: 610031,612850) tubulin beta-2B chain (445 aa)
initn: 2799 init1: 2799 opt: 2808 Z-score: 3187.9 bits: 599.1 E(91774): 8.5e-171
Smith-Waterman score: 2808; 92.2% identity (98.4% similar) in 446 aa overlap (1-446:1-445)
10 20 30 40 50 60
pF1KE1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV
::::::::::::::::::::::::::::::::.:.: ::::::::::.::::::...:::
NP_821 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV
::::::::::::::::::: ::..::::::.:::::::::::::::::::::::::::::
NP_821 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV
::: :.::::::::::::::::::::::::::::.::::::::::::::.::::::::::
NP_821 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL
::::::::.::::::::::::::::::::::::::::.:::::::::::::::::::: :
NP_821 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM
::::::::::::::::::::::::::::::::::.::::::::::::::::::::.::::
NP_821 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
::::::::::::::..::::::::::::::: .:.:::::::::::::::.:::::::::
NP_821 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440 450
pF1KE1 EYQQYQDATAEEEGEMYEDDEEESEAQGPK
::::::::::.:.:: .:..: :.::
NP_821 EYQQYQDATADEQGE-FEEEEGEDEA
430 440
>>NP_821133 (OMIM: 156610,191130,615771) tubulin beta ch (444 aa)
initn: 2793 init1: 2793 opt: 2793 Z-score: 3170.9 bits: 595.9 E(91774): 7.5e-170
Smith-Waterman score: 2793; 92.6% identity (97.7% similar) in 444 aa overlap (1-444:1-444)
10 20 30 40 50 60
pF1KE1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV
::::::::::::::::::::::::::::::::.:.: :::::::.:::::::::.. :::
NP_821 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV
::::::::::::::::::: ::..::::::.:::::::::::::::::::::::::::::
NP_821 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV
::: :.::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_821 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL
::::::::.::::::::::::::::::::::::::::.:::::::::::::::::::: :
NP_821 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM
::::::::::::::::::::::::::::::::::.:::::::::::::::::.:::::::
NP_821 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
::::::::::::::.:::::::::::::::: .:.:::::::::::::::.:::::::::
NP_821 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
:::. :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440 450
pF1KE1 EYQQYQDATAEEEGEMYEDDEEESEAQGPK
::::::::::::: .. :. :::.
NP_821 EYQQYQDATAEEEEDFGEEAEEEA
430 440
>>NP_001060 (OMIM: 615101,615763) tubulin beta-2A chain (445 aa)
initn: 2784 init1: 2784 opt: 2793 Z-score: 3170.9 bits: 595.9 E(91774): 7.5e-170
Smith-Waterman score: 2793; 91.9% identity (98.2% similar) in 446 aa overlap (1-446:1-445)
10 20 30 40 50 60
pF1KE1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV
::::::::::::::::::::::::::::::::.:.: ::::::::::.::::::...:::
NP_001 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV
::::::::::::::::::: ::..::::::.:::::::::::::::::::::::::::::
NP_001 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV
::: :.::::::::::::::::::::::::::::.::::::::::::::.::::::::::
NP_001 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL
::::::::.::::::::::: ::::::::::::::::.:::::::::::::::::::: :
NP_001 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM
::::::::::::::::::::::::::::::::::.::::::::::::::::::::.::::
NP_001 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
::::::::::::::..::::::::::::::: .:.:::::::::::::::.:::::::::
NP_001 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440 450
pF1KE1 EYQQYQDATAEEEGEMYEDDEEESEAQGPK
::::::::::.:.:: .:..: :.::
NP_001 EYQQYQDATADEQGE-FEEEEGEDEA
430 440
>>NP_006078 (OMIM: 128101,602662,612438) tubulin beta-4A (444 aa)
initn: 2768 init1: 2768 opt: 2787 Z-score: 3164.1 bits: 594.7 E(91774): 1.8e-169
Smith-Waterman score: 2787; 92.3% identity (98.2% similar) in 443 aa overlap (1-443:1-442)
10 20 30 40 50 60
pF1KE1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV
::::::.:::::::::::::::::::::::::.:.: ::::::::::.::::::.. .::
NP_006 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV
:::.::::::::::::::: ::..::::::.:::::::::::::::::::::::.:::::
NP_006 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV
::: :.::::::::::::::::::::::::::::.:::.:::::::::::::::::::::
NP_006 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL
::::::::.::::::::::::::::::::::::::::.:::::::::::::::::::: :
NP_006 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
::::::::::::::.::::::::::::::::..:::::::::::::::::.:::::::::
NP_006 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
:::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440 450
pF1KE1 EYQQYQDATAEEEGEMYEDDEEESEAQGPK
:::::::::::: ::. :. :::
NP_006 EYQQYQDATAEE-GEFEEEAEEEVA
430 440
>>NP_001276058 (OMIM: 128101,602662,612438) tubulin beta (444 aa)
initn: 2768 init1: 2768 opt: 2787 Z-score: 3164.1 bits: 594.7 E(91774): 1.8e-169
Smith-Waterman score: 2787; 92.3% identity (98.2% similar) in 443 aa overlap (1-443:1-442)
10 20 30 40 50 60
pF1KE1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV
::::::.:::::::::::::::::::::::::.:.: ::::::::::.::::::.. .::
NP_001 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV
:::.::::::::::::::: ::..::::::.:::::::::::::::::::::::.:::::
NP_001 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV
::: :.::::::::::::::::::::::::::::.:::.:::::::::::::::::::::
NP_001 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL
::::::::.::::::::::::::::::::::::::::.:::::::::::::::::::: :
NP_001 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_001 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
::::::::::::::.::::::::::::::::..:::::::::::::::::.:::::::::
NP_001 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
:::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440 450
pF1KE1 EYQQYQDATAEEEGEMYEDDEEESEAQGPK
:::::::::::: ::. :. :::
NP_001 EYQQYQDATAEE-GEFEEEAEEEVA
430 440
>>NP_001276056 (OMIM: 128101,602662,612438) tubulin beta (489 aa)
initn: 2768 init1: 2768 opt: 2787 Z-score: 3163.5 bits: 594.7 E(91774): 1.9e-169
Smith-Waterman score: 2787; 92.3% identity (98.2% similar) in 443 aa overlap (1-443:46-487)
10 20 30
pF1KE1 MREIVHIQAGQCGNQIGAKFWEVISDEHGI
::::::.:::::::::::::::::::::::
NP_001 AVSAASSTLAAAAAPRARATAAASTLSATAMREIVHLQAGQCGNQIGAKFWEVISDEHGI
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE1 DPSGNYVGDSDLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNF
::.:.: ::::::::::.::::::.. .:::::.::::::::::::::: ::..::::::
NP_001 DPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNF
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE1 IFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTL
.:::::::::::::::::::::::.:::::::: :.::::::::::::::::::::::::
NP_001 VFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
140 150 160 170 180 190
160 170 180 190 200 210
pF1KE1 LISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDI
::::.:::.:::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_001 LISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
200 210 220 230 240 250
220 230 240 250 260 270
pF1KE1 CFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
:::::::.:::::::::::::::::::: :::::::::::::::::::::::::::::::
NP_001 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
260 270 280 290 300 310
280 290 300 310 320 330
pF1KE1 APLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGRMSMKEVDEQM
::::.:::::::::::::::::::::::::::::::::::::::.:::::::::::::::
NP_001 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
320 330 340 350 360 370
340 350 360 370 380 390
pF1KE1 LAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFR
:..:::::::::::::::::.::::::::::::..:::::::::::::::::::::::::
NP_001 LSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFR
380 390 400 410 420 430
400 410 420 430 440 450
pF1KE1 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDEEESEAQGPK
:::::::::::::::::::::::::::::::::::::::::: ::. :. :::
NP_001 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE-GEFEEEAEEEVA
440 450 460 470 480
450 residues in 1 query sequences
64092750 residues in 91774 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Jul 16 16:05:24 2019 done: Tue Jul 16 16:05:25 2019
Total Scan time: 4.230 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]