FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3264, 643 aa 1>>>pF1KE3264 643 - 643 aa - 643 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.9202+/-0.000913; mu= 13.9110+/- 0.055 mean_var=139.5087+/-29.568, 0's: 0 Z-trim(110.9): 99 B-trim: 481 in 1/52 Lambda= 0.108586 statistics sampled from 11879 (11990) to 11879 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.368), width: 16 Scan time: 3.640 The best scores are: opt bits E(32554) CCDS10758.1 AMFR gene_id:267|Hs108|chr16 ( 643) 4317 688.0 1e-197 CCDS8097.1 SYVN1 gene_id:84447|Hs108|chr11 ( 616) 437 80.2 9.4e-15 CCDS31605.1 SYVN1 gene_id:84447|Hs108|chr11 ( 617) 437 80.2 9.4e-15 >>CCDS10758.1 AMFR gene_id:267|Hs108|chr16 (643 aa) initn: 4317 init1: 4317 opt: 4317 Z-score: 3663.1 bits: 688.0 E(32554): 1e-197 Smith-Waterman score: 4317; 100.0% identity (100.0% similar) in 643 aa overlap (1-643:1-643) 10 20 30 40 50 60 pF1KE3 MPLLFLERFPWPSLRTYTGLSGLALLGTIISAYRALSQPEAGPGEPDQLTASLQPEPPAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MPLLFLERFPWPSLRTYTGLSGLALLGTIISAYRALSQPEAGPGEPDQLTASLQPEPPAP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ARPSAGGPRARDVAQYLLSDSLFVWVLVNTACCVLMLVAKLIQCIVFGPLRVSERQHLKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 ARPSAGGPRARDVAQYLLSDSLFVWVLVNTACCVLMLVAKLIQCIVFGPLRVSERQHLKD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 KFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAGLVFLHLMVQLCKDRFEYLSFSPTTPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 KFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAGLVFLHLMVQLCKDRFEYLSFSPTTPM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 SSHGRVLSLLVAMLLSCCGLAAVCSITGYTHGMHTLAFMAAESLLVTVRTAHVILRYVIH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 SSHGRVLSLLVAMLLSCCGLAAVCSITGYTHGMHTLAFMAAESLLVTVRTAHVILRYVIH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 LWDLNHEGTWEGKGTYVYYTDFVMELTLLSLDLMHHIHMLLFGNIWLSMASLVIFMQLRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LWDLNHEGTWEGKGTYVYYTDFVMELTLLSLDLMHHIHMLLFGNIWLSMASLVIFMQLRY 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 LFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLF 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 HNSCLRSWLEQDTSCPTCRMSLNIADNNRVREEHQGENLDENLVPVAAAEGRPRLNQHNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 HNSCLRSWLEQDTSCPTCRMSLNIADNNRVREEHQGENLDENLVPVAAAEGRPRLNQHNH 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 FFHFDGSRIASWLPSFSVEVMHTTNILGITQASNSQLNAMAHQIQEMFPQVPYHLVLQDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 FFHFDGSRIASWLPSFSVEVMHTTNILGITQASNSQLNAMAHQIQEMFPQVPYHLVLQDL 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 QLTRSVEITTDNILEGRIQVPFPTQRSDSIRPALNSPVERPSSDQEEGETSAQTERVPLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 QLTRSVEITTDNILEGRIQVPFPTQRSDSIRPALNSPVERPSSDQEEGETSAQTERVPLD 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE3 LSPRLEETLDFGEVEVEPSEVEDFEARGSRFSKSADERQRMLVQRKDELLQQARKRFLNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LSPRLEETLDFGEVEVEPSEVEDFEARGSRFSKSADERQRMLVQRKDELLQQARKRFLNK 550 560 570 580 590 600 610 620 630 640 pF1KE3 SSEDDAASESFLPSEGASSDPVTLRRRMLAAAAERRLQKQQTS ::::::::::::::::::::::::::::::::::::::::::: CCDS10 SSEDDAASESFLPSEGASSDPVTLRRRMLAAAAERRLQKQQTS 610 620 630 640 >>CCDS8097.1 SYVN1 gene_id:84447|Hs108|chr11 (616 aa) initn: 444 init1: 180 opt: 437 Z-score: 378.4 bits: 80.2 E(32554): 9.4e-15 Smith-Waterman score: 438; 28.8% identity (58.8% similar) in 320 aa overlap (76-382:35-333) 50 60 70 80 90 100 pF1KE3 PDQLTASLQPEPPAPARPSAGGPRARDVAQYLLSDSLFVWVLVNTACCVLMLVAKLIQCI :: ..: . :: : ...:..:.. . CCDS80 AVMMAASLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKVMGKV 10 20 30 40 50 60 110 120 130 140 150 160 pF1KE3 VFGPLRVSERQHLKDKFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAGLVFLHLMVQLC :: ::..: .:: .. : . . . : :. . . : :. :.::. . : CCDS80 FFGQLRAAEMEHLLERSW-YAVTETCLAFTVFRDDFSPRFVAL---FTLLLFLKCFHWLA 70 80 90 100 110 120 170 180 190 200 210 pF1KE3 KDRFEYLSFSPTTPMSSHGRVLSLLVAMLLSCCGLAAVCSITGYTHGMHT------LAFM .:: ... ::. : :..::. . :. .. :.. : :.: CCDS80 EDRVDFMERSPNISWLFHCRIVSLMFLL-----GILDFLFVSHAYHSILTRGASVQLVFG 130 140 150 160 170 220 230 240 250 260 270 pF1KE3 AAESLLVTVRTAHVILRYVIHLWDLNHEGTWEGKGTYVYYTD----FVMELTLLS-LDLM ..:.:. . ....::.: ::. :. :..:..:. ::. :. : .. . .: CCDS80 FEYAILMTM-VLTIFIKYVLHSVDLQSENPWDNKAVYMLYTELFTGFIKVLLYMAFMTIM 180 190 200 210 220 230 280 290 300 310 320 330 pF1KE3 HHIHML-LFGNIWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARFAVATPEE ..: . :: : ... .: . . : : . :.. ::.. . ::::: CCDS80 IKVHTFPLF-------AIRPMYLAMRQFKKAVTDAIMSR----RAIRNMNTLYPDATPEE 240 250 260 270 280 340 350 360 370 380 390 pF1KE3 LAVNNDDCAICWDSM-QAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIADNNRVRE : . .. : :: . : .:..:::.:.::.::::::.... .::::::.. CCDS80 LQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSP 290 300 310 320 330 340 400 410 420 430 440 450 pF1KE3 EHQGENLDENLVPVAAAEGRPRLNQHNHFFHFDGSRIASWLPSFSVEVMHTTNILGITQA CCDS80 PPPEPADQGPPPAPHPPPLLPQPPNFPQGLLPPFPPGMFPLWPPMGPFPPVPPPPSSGEA 350 360 370 380 390 400 >>CCDS31605.1 SYVN1 gene_id:84447|Hs108|chr11 (617 aa) initn: 433 init1: 169 opt: 437 Z-score: 378.3 bits: 80.2 E(32554): 9.4e-15 Smith-Waterman score: 438; 28.8% identity (58.8% similar) in 320 aa overlap (76-382:35-333) 50 60 70 80 90 100 pF1KE3 PDQLTASLQPEPPAPARPSAGGPRARDVAQYLLSDSLFVWVLVNTACCVLMLVAKLIQCI :: ..: . :: : ...:..:.. . CCDS31 AVMMAASLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKVMGKV 10 20 30 40 50 60 110 120 130 140 150 160 pF1KE3 VFGPLRVSERQHLKDKFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAGLVFLHLMVQLC :: ::..: .:: .. : . . . : :. . . : :. :.::. . : CCDS31 FFGQLRAAEMEHLLERSW-YAVTETCLAFTVFRDDFSPRFVAL---FTLLLFLKCFHWLA 70 80 90 100 110 120 170 180 190 200 210 pF1KE3 KDRFEYLSFSPTTPMSSHGRVLSLLVAMLLSCCGLAAVCSITGYTHGMHT------LAFM .:: ... ::. : :..::. . :. .. :.. : :.: CCDS31 EDRVDFMERSPNISWLFHCRIVSLMFLL-----GILDFLFVSHAYHSILTRGASVQLVFG 130 140 150 160 170 220 230 240 250 260 270 pF1KE3 AAESLLVTVRTAHVILRYVIHLWDLNHEGTWEGKGTYVYYTD----FVMELTLLS-LDLM ..:.:. . ....::.: ::. :. :..:..:. ::. :. : .. . .: CCDS31 FEYAILMTM-VLTIFIKYVLHSVDLQSENPWDNKAVYMLYTELFTGFIKVLLYMAFMTIM 180 190 200 210 220 230 280 290 300 310 320 330 pF1KE3 HHIHML-LFGNIWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARFAVATPEE ..: . :: : ... .: . . : : . :.. ::.. . ::::: CCDS31 IKVHTFPLF-------AIRPMYLAMRQFKKAVTDAIMSR----RAIRNMNTLYPDATPEE 240 250 260 270 280 340 350 360 370 380 390 pF1KE3 LAVNNDDCAICWDSM-QAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIADNNRVRE : . .. : :: . : .:..:::.:.::.::::::.... .::::::.. CCDS31 LQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSP 290 300 310 320 330 340 400 410 420 430 440 450 pF1KE3 EHQGENLDENLVPVAAAEGRPRLNQHNHFFHFDGSRIASWLPSFSVEVMHTTNILGITQA CCDS31 PPPEPADQGPPPAPHPPPLLPQPPNFPQGLLPPFPPGMFPLWPPMGPFPPVPPPPSSGEA 350 360 370 380 390 400 643 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 01:38:13 2016 done: Sun Nov 6 01:38:14 2016 Total Scan time: 3.640 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]