FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5632, 490 aa
  1>>>pF1KE5632 490 - 490 aa - 490 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.9669+/-0.000441; mu= -7.3600+/- 0.028
 mean_var=319.8060+/-64.393, 0's: 0 Z-trim(119.4): 11  B-trim: 0 in 0/62
 Lambda= 0.071718
 statistics sampled from 33473 (33484) to 33473 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.393), width:  16
 Scan time: 10.120

The best scores are:                                      opt bits E(85289)
NP_056474 (OMIM: 615874) ribosomal L1 domain-conta ( 490) 3138 338.5 2.6e-92


>>NP_056474 (OMIM: 615874) ribosomal L1 domain-containin  (490 aa)
 initn: 3138 init1: 3138 opt: 3138  Z-score: 1778.1  bits: 338.5 E(85289): 2.6e-92
Smith-Waterman score: 3138; 100.0% identity (100.0% similar) in 490 aa overlap (1-490:1-490)

               10        20        30        40        50        60
pF1KE5 MEDSASASLSSAAATGTSTSTPAAPTARKQLDKEQVRKAVDALLTHCKSRKNNYGLLLNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MEDSASASLSSAAATGTSTSTPAAPTARKQLDKEQVRKAVDALLTHCKSRKNNYGLLLNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 NESLFLMVVLWKIPSKELRVRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 NESLFLMVVLWKIPSKELRVRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 HGIKTVSQIISLQTLKKEYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 HGIKTVSQIISLQTLKKEYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 VSVNLLSKNLSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 VSVNLLSKNLSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 LPEKWESVKLLFVKTEKSAALPIFSSFVSNWDEATKRSLLNKKKKEARRKRRERNFEKQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LPEKWESVKLLFVKTEKSAALPIFSSFVSNWDEATKRSLLNKKKKEARRKRRERNFEKQK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 ERKKKRQQARKTASVLSKDDVAPESGDTTVKKPESKKEQTPEHGKKKRGRGKAQVKATNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 ERKKKRQQARKTASVLSKDDVAPESGDTTVKKPESKKEQTPEHGKKKRGRGKAQVKATNE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 SEDEIPQLVPIGKKTPANEKVEIQKHATGKKSPAKSPNPSTPRGKKRKALPASETPKAAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SEDEIPQLVPIGKKTPANEKVEIQKHATGKKSPAKSPNPSTPRGKKRKALPASETPKAAE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 SETPGKSPEKKPKIKEEAVKEKSPSLGKKDARQTPKKPEAKFFTTPSKSVRKASHTPKKW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SETPGKSPEKKPKIKEEAVKEKSPSLGKKDARQTPKKPEAKFFTTPSKSVRKASHTPKKW
              430       440       450       460       470       480

              490
pF1KE5 PKKPKVPQST
       ::::::::::
NP_056 PKKPKVPQST
              490




490 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:22:02 2016 done: Tue Nov  8 05:22:04 2016
 Total Scan time: 10.120 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]