FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5077, 199 aa 1>>>pF1KE5077 199 - 199 aa - 199 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.4391+/-0.000731; mu= 2.8559+/- 0.044 mean_var=222.3692+/-44.691, 0's: 0 Z-trim(118.0): 2 B-trim: 197 in 1/54 Lambda= 0.086008 statistics sampled from 18817 (18819) to 18817 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.845), E-opt: 0.2 (0.578), width: 16 Scan time: 2.560 The best scores are: opt bits E(32554) CCDS10274.1 RPP25 gene_id:54913|Hs108|chr15 ( 199) 1337 176.9 7.2e-45 CCDS6559.1 RPP25L gene_id:138716|Hs108|chr9 ( 163) 425 63.7 7.3e-11 >>CCDS10274.1 RPP25 gene_id:54913|Hs108|chr15 (199 aa) initn: 1337 init1: 1337 opt: 1337 Z-score: 919.0 bits: 176.9 E(32554): 7.2e-45 Smith-Waterman score: 1337; 99.5% identity (99.5% similar) in 199 aa overlap (1-199:1-199) 10 20 30 40 50 60 pF1KE5 MENFRKVRSEEAPAGCGAEGGGPGSGPFADLAPGAVHMRVKEGSKIRNLMAFATASMAQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MENFRKVRSEEAPAGCGAEGGGPGSGPFADLAPGAVHMRVKEGSKIRNLMAFATASMAQP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 ATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGSTQGQTPG :::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: CCDS10 ATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTQGQTPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 EPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPAAGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 EPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPAAGE 130 140 150 160 170 180 190 pF1KE5 GSAKRSQPEPGVADEDQTA ::::::::::::::::::: CCDS10 GSAKRSQPEPGVADEDQTA 190 >>CCDS6559.1 RPP25L gene_id:138716|Hs108|chr9 (163 aa) initn: 428 init1: 255 opt: 425 Z-score: 308.5 bits: 63.7 E(32554): 7.3e-11 Smith-Waterman score: 435; 42.4% identity (69.2% similar) in 172 aa overlap (1-172:1-154) 10 20 30 40 50 60 pF1KE5 MENFRKVRSEEAPAGCGAEGGGPGSGPFADLAPGAVHMRVKEGSKIRNLMAFATASMAQP ::..::. : : :: :. :. .: : ...:::..:::::::...: . . CCDS65 MEHYRKAGSVELPA--------PS--PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGG 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 ATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGSTQGQTPG ..: .:::: :::. :.:.::::.:::. ::::.:.::. .... : .: . : : CCDS65 SARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSW--VPASPDTGLDP- 60 70 80 90 100 130 140 150 160 170 180 pF1KE5 EPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPAAGE :.: ..::.. .:::.: ::: . :::::. :: .: :.. . :: CCDS65 -----LTVRRHVPAVWVLLSRDPLDPNECGYQPPGAPPGLGSMPSSSCGPRSRRRARDTR 110 120 130 140 150 160 190 pF1KE5 GSAKRSQPEPGVADEDQTA CCDS65 S 199 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 03:43:10 2016 done: Tue Nov 8 03:43:10 2016 Total Scan time: 2.560 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]