FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1764, 270 aa 1>>>pF1KE1764 270 - 270 aa - 270 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0715+/-0.000288; mu= 11.8792+/- 0.018 mean_var=82.4291+/-16.547, 0's: 0 Z-trim(119.5): 5 B-trim: 1611 in 1/55 Lambda= 0.141265 statistics sampled from 33499 (33504) to 33499 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.393), width: 16 Scan time: 6.840 The best scores are: opt bits E(85289) XP_005253966 (OMIM: 602740) PREDICTED: 5'-AMP-acti ( 270) 1855 387.0 1.9e-107 NP_006244 (OMIM: 602740) 5'-AMP-activated protein ( 270) 1855 387.0 1.9e-107 NP_005390 (OMIM: 602741) 5'-AMP-activated protein ( 272) 1298 273.5 2.9e-73 XP_011508031 (OMIM: 602741) PREDICTED: 5'-AMP-acti ( 265) 1148 242.9 4.5e-64 XP_016857186 (OMIM: 602741) PREDICTED: 5'-AMP-acti ( 197) 581 127.3 2.1e-29 >>XP_005253966 (OMIM: 602740) PREDICTED: 5'-AMP-activate (270 aa) initn: 1855 init1: 1855 opt: 1855 Z-score: 2049.9 bits: 387.0 E(85289): 1.9e-107 Smith-Waterman score: 1855; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270) 10 20 30 40 50 60 pF1KE1 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKLPLTRSHNNFVAILDLPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKLPLTRSHNNFVAILDLPE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSELS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSELS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLY 190 200 210 220 230 240 250 260 270 pF1KE1 ALSIKDGVMVLSATHRYKKKYVTTLLYKPI :::::::::::::::::::::::::::::: XP_005 ALSIKDGVMVLSATHRYKKKYVTTLLYKPI 250 260 270 >>NP_006244 (OMIM: 602740) 5'-AMP-activated protein kina (270 aa) initn: 1855 init1: 1855 opt: 1855 Z-score: 2049.9 bits: 387.0 E(85289): 1.9e-107 Smith-Waterman score: 1855; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270) 10 20 30 40 50 60 pF1KE1 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKLPLTRSHNNFVAILDLPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKLPLTRSHNNFVAILDLPE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSELS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 GEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSELS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 SSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLY 190 200 210 220 230 240 250 260 270 pF1KE1 ALSIKDGVMVLSATHRYKKKYVTTLLYKPI :::::::::::::::::::::::::::::: NP_006 ALSIKDGVMVLSATHRYKKKYVTTLLYKPI 250 260 270 >>NP_005390 (OMIM: 602741) 5'-AMP-activated protein kina (272 aa) initn: 1276 init1: 555 opt: 1298 Z-score: 1436.4 bits: 273.5 E(85289): 2.9e-73 Smith-Waterman score: 1298; 70.3% identity (87.2% similar) in 273 aa overlap (1-270:1-272) 10 20 30 40 50 60 pF1KE1 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF ::::.:.:.. ::::. :. : ...:: : . ::.. : .: ..: . : : .:: NP_005 MGNTTSDRVSGERHGA-KAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEF 10 20 30 40 50 70 80 90 100 110 pF1KE1 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPLTRSHNNFVAILDLP ..::.::: . : ::::::.::. :::::..:::::::: :.:: .:::.:::::::: NP_005 VSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLP 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 EGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS-- ::::::::::::::.::::::.:::::::.::.:.:::.:::::::: .::.. :..: NP_005 EGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCR 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN .::::::::: :: :. . ::::..:::::::::::::::::.::::::::::::::::: NP_005 DLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN 180 190 200 210 220 230 240 250 260 270 pF1KE1 HLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI :::::::::.::::::::::::::::::::::: NP_005 HLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI 240 250 260 270 >>XP_011508031 (OMIM: 602741) PREDICTED: 5'-AMP-activate (265 aa) initn: 1126 init1: 458 opt: 1148 Z-score: 1271.3 bits: 242.9 E(85289): 4.5e-64 Smith-Waterman score: 1148; 67.7% identity (85.9% similar) in 248 aa overlap (1-245:1-247) 10 20 30 40 50 60 pF1KE1 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF ::::.:.:.. ::::. :. : ...:: : . ::.. : .: ..: . : : .:: XP_011 MGNTTSDRVSGERHGA-KAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEF 10 20 30 40 50 70 80 90 100 110 pF1KE1 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPLTRSHNNFVAILDLP ..::.::: . : ::::::.::. :::::..:::::::: :.:: .:::.:::::::: XP_011 VSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLP 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 EGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS-- ::::::::::::::.::::::.:::::::.::.:.:::.:::::::: .::.. :..: XP_011 EGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCR 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN .::::::::: :: :. . ::::..:::::::::::::::::.::::::::::::::::: XP_011 DLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN 180 190 200 210 220 230 240 250 260 270 pF1KE1 HLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI :::::::: XP_011 HLYALSIKIKKLRLREGQIARQCDGP 240 250 260 >>XP_016857186 (OMIM: 602741) PREDICTED: 5'-AMP-activate (197 aa) initn: 291 init1: 291 opt: 581 Z-score: 648.8 bits: 127.3 E(85289): 2.1e-29 Smith-Waterman score: 581; 60.0% identity (80.7% similar) in 140 aa overlap (1-139:1-139) 10 20 30 40 50 60 pF1KE1 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF ::::.:.:.. ::::. :. : ...:: : . ::.. : .: ..: . : : .:: XP_016 MGNTTSDRVSGERHGA-KAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEF 10 20 30 40 50 70 80 90 100 110 pF1KE1 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPLTRSHNNFVAILDLP ..::.::: . : ::::::.::. :::::..:::::::: :.:: .:::.:::::::: XP_016 VSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLP 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 EGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSEL ::::::::::::::.::::: XP_016 EGEHQYKFFVDGQWVHDPSETFPAHPQGLMVKKCMRFDLRKDSNPHPSFLLIYFKLFLTK 120 130 140 150 160 170 270 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 14:41:58 2016 done: Sun Nov 6 14:41:59 2016 Total Scan time: 6.840 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]