FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1764, 270 aa 1>>>pF1KE1764 270 - 270 aa - 270 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2214+/-0.00068; mu= 11.1876+/- 0.041 mean_var=84.6401+/-16.748, 0's: 0 Z-trim(112.1): 4 B-trim: 0 in 0/52 Lambda= 0.139408 statistics sampled from 12916 (12918) to 12916 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.397), width: 16 Scan time: 2.260 The best scores are: opt bits E(32554) CCDS9191.1 PRKAB1 gene_id:5564|Hs108|chr12 ( 270) 1855 382.1 2.2e-106 CCDS925.1 PRKAB2 gene_id:5565|Hs108|chr1 ( 272) 1298 270.1 1.2e-72 >>CCDS9191.1 PRKAB1 gene_id:5564|Hs108|chr12 (270 aa) initn: 1855 init1: 1855 opt: 1855 Z-score: 2023.5 bits: 382.1 E(32554): 2.2e-106 Smith-Waterman score: 1855; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270) 10 20 30 40 50 60 pF1KE1 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKLPLTRSHNNFVAILDLPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKLPLTRSHNNFVAILDLPE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSELS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 GEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSELS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 SSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLY 190 200 210 220 230 240 250 260 270 pF1KE1 ALSIKDGVMVLSATHRYKKKYVTTLLYKPI :::::::::::::::::::::::::::::: CCDS91 ALSIKDGVMVLSATHRYKKKYVTTLLYKPI 250 260 270 >>CCDS925.1 PRKAB2 gene_id:5565|Hs108|chr1 (272 aa) initn: 1276 init1: 555 opt: 1298 Z-score: 1418.0 bits: 270.1 E(32554): 1.2e-72 Smith-Waterman score: 1298; 70.3% identity (87.2% similar) in 273 aa overlap (1-270:1-272) 10 20 30 40 50 60 pF1KE1 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF ::::.:.:.. ::::. :. : ...:: : . ::.. : .: ..: . : : .:: CCDS92 MGNTTSDRVSGERHGA-KAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEF 10 20 30 40 50 70 80 90 100 110 pF1KE1 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPLTRSHNNFVAILDLP ..::.::: . : ::::::.::. :::::..:::::::: :.:: .:::.:::::::: CCDS92 VSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLP 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 EGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS-- ::::::::::::::.::::::.:::::::.::.:.:::.:::::::: .::.. :..: CCDS92 EGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCR 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN .::::::::: :: :. . ::::..:::::::::::::::::.::::::::::::::::: CCDS92 DLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN 180 190 200 210 220 230 240 250 260 270 pF1KE1 HLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI :::::::::.::::::::::::::::::::::: CCDS92 HLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI 240 250 260 270 270 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 14:41:58 2016 done: Sun Nov 6 14:41:58 2016 Total Scan time: 2.260 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]