Result of FASTA (ccds) for pFN21AE1764
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1764, 270 aa
  1>>>pF1KE1764 270 - 270 aa - 270 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2214+/-0.00068; mu= 11.1876+/- 0.041
 mean_var=84.6401+/-16.748, 0's: 0 Z-trim(112.1): 4  B-trim: 0 in 0/52
 Lambda= 0.139408
 statistics sampled from 12916 (12918) to 12916 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.397), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS9191.1 PRKAB1 gene_id:5564|Hs108|chr12         ( 270) 1855 382.1 2.2e-106
CCDS925.1 PRKAB2 gene_id:5565|Hs108|chr1           ( 272) 1298 270.1 1.2e-72


>>CCDS9191.1 PRKAB1 gene_id:5564|Hs108|chr12              (270 aa)
 initn: 1855 init1: 1855 opt: 1855  Z-score: 2023.5  bits: 382.1 E(32554): 2.2e-106
Smith-Waterman score: 1855; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KE1 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKLPLTRSHNNFVAILDLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKLPLTRSHNNFVAILDLPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 GEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSELS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 SSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 SSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLY
              190       200       210       220       230       240

              250       260       270
pF1KE1 ALSIKDGVMVLSATHRYKKKYVTTLLYKPI
       ::::::::::::::::::::::::::::::
CCDS91 ALSIKDGVMVLSATHRYKKKYVTTLLYKPI
              250       260       270

>>CCDS925.1 PRKAB2 gene_id:5565|Hs108|chr1                (272 aa)
 initn: 1276 init1: 555 opt: 1298  Z-score: 1418.0  bits: 270.1 E(32554): 1.2e-72
Smith-Waterman score: 1298; 70.3% identity (87.2% similar) in 273 aa overlap (1-270:1-272)

               10        20        30        40        50        60
pF1KE1 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF
       ::::.:.:.. ::::. :. : ...::   : . ::.. : .: ..:   . : :  .::
CCDS92 MGNTTSDRVSGERHGA-KAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEF
               10         20        30        40        50         

               70        80        90       100        110         
pF1KE1 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPLTRSHNNFVAILDLP
       ..::.::: . :   ::::::.::. :::::..:::::::: :.:: .:::.::::::::
CCDS92 VSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLP
      60        70        80        90       100       110         

     120       130       140       150       160       170         
pF1KE1 EGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS--
       ::::::::::::::.::::::.:::::::.::.:.:::.:::::::: .::.. :..:  
CCDS92 EGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCR
     120       130       140       150       160       170         

       180       190       200       210       220       230       
pF1KE1 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN
       .::::::::: :: :. . ::::..:::::::::::::::::.:::::::::::::::::
CCDS92 DLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN
     180       190       200       210       220       230         

       240       250       260       270
pF1KE1 HLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI
       :::::::::.:::::::::::::::::::::::
CCDS92 HLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI
     240       250       260       270  




270 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:41:58 2016 done: Sun Nov  6 14:41:58 2016
 Total Scan time:  2.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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