Result of FASTA (omim) for pFN21AE2014
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2014, 592 aa
  1>>>pF1KE2014 592 - 592 aa - 592 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4482+/-0.000575; mu= 6.5329+/- 0.035
 mean_var=295.2593+/-62.072, 0's: 0 Z-trim(116.1): 42  B-trim: 889 in 1/52
 Lambda= 0.074640
 statistics sampled from 27037 (27077) to 27037 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.317), width:  16
 Scan time:  8.330

The best scores are:                                      opt bits E(85289)
NP_006759 (OMIM: 604986) BRCA1-associated protein  ( 592) 3936 438.2 3.6e-122
XP_005254001 (OMIM: 604986) PREDICTED: BRCA1-assoc ( 633) 3768 420.2  1e-116
XP_016875481 (OMIM: 604986) PREDICTED: BRCA1-assoc ( 538) 3429 383.6 9.2e-106
XP_016875482 (OMIM: 604986) PREDICTED: BRCA1-assoc ( 443) 2980 335.1 2.9e-91
XP_016875484 (OMIM: 604986) PREDICTED: BRCA1-assoc ( 443) 2980 335.1 2.9e-91
XP_016875483 (OMIM: 604986) PREDICTED: BRCA1-assoc ( 443) 2980 335.1 2.9e-91
XP_011537091 (OMIM: 604986) PREDICTED: BRCA1-assoc ( 305) 1976 226.8 8.1e-59


>>NP_006759 (OMIM: 604986) BRCA1-associated protein [Hom  (592 aa)
 initn: 3936 init1: 3936 opt: 3936  Z-score: 2314.4  bits: 438.2 E(85289): 3.6e-122
Smith-Waterman score: 3936; 100.0% identity (100.0% similar) in 592 aa overlap (1-592:1-592)

               10        20        30        40        50        60
pF1KE2 MSVSLVVIRLELAEHSPVPAGFGFSAAAGEMSDEEIKKTTLASAVACLEGKSPGEKVAII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSVSLVVIRLELAEHSPVPAGFGFSAAAGEMSDEEIKKTTLASAVACLEGKSPGEKVAII
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 HQHLGRREMTDVIIETMKSNPDELKTTVEERKSSEASPTAQRSKDHSKECINAAPDSPSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 HQHLGRREMTDVIIETMKSNPDELKTTVEERKSSEASPTAQRSKDHSKECINAAPDSPSK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 QLPDQISFFSGNPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCILTVPAAMTSHDLMKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QLPDQISFFSGNPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCILTVPAAMTSHDLMKF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 VAPFNEVIEQMKIIRDSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VAPFNEVIEQMKIIRDSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 RAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 PVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 TNHRVWDYAGDNYVHRLVASKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TNHRVWDYAGDNYVHRLVASKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 IYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 IYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTKV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 AKLTNELKEEQEMNKCLRANQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AKLTNELKEEQEMNKCLRANQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFYL
              490       500       510       520       530       540

              550       560       570       580       590  
pF1KE2 ETQQKINHLPAETRQEIQEGQINIAMASASSPASSGGSGKLPSRKGRSKRGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ETQQKINHLPAETRQEIQEGQINIAMASASSPASSGGSGKLPSRKGRSKRGK
              550       560       570       580       590  

>>XP_005254001 (OMIM: 604986) PREDICTED: BRCA1-associate  (633 aa)
 initn: 3922 init1: 3768 opt: 3768  Z-score: 2216.3  bits: 420.2 E(85289): 1e-116
Smith-Waterman score: 3795; 93.4% identity (93.4% similar) in 624 aa overlap (10-592:10-633)

               10        20                                        
pF1KE2 MSVSLVVIRLELAEHSPVPAGFGFSAA---------------------------------
                ::::::::::::::::::                                 
XP_005 MSVSLVVIRLELAEHSPVPAGFGFSAAGESRGLAAFPVAGSGPGGLPFPKHWPGKSPRRG
               10        20        30        40        50        60

                30        40        50        60        70         
pF1KE2 --------AGEMSDEEIKKTTLASAVACLEGKSPGEKVAIIHQHLGRREMTDVIIETMKS
               ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLPRKTRRAGEMSDEEIKKTTLASAVACLEGKSPGEKVAIIHQHLGRREMTDVIIETMKS
               70        80        90       100       110       120

      80        90       100       110       120       130         
pF1KE2 NPDELKTTVEERKSSEASPTAQRSKDHSKECINAAPDSPSKQLPDQISFFSGNPSVEIVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NPDELKTTVEERKSSEASPTAQRSKDHSKECINAAPDSPSKQLPDQISFFSGNPSVEIVH
              130       140       150       160       170       180

     140       150       160       170       180       190         
pF1KE2 GIMHLYKTNKMTSLKEDVRRSAMLCILTVPAAMTSHDLMKFVAPFNEVIEQMKIIRDSTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GIMHLYKTNKMTSLKEDVRRSAMLCILTVPAAMTSHDLMKFVAPFNEVIEQMKIIRDSTP
              190       200       210       220       230       240

     200       210       220       230       240       250         
pF1KE2 NQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYVERAEVLKSEDGASLPVMDLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYVERAEVLKSEDGASLPVMDLT
              250       260       270       280       290       300

     260       270       280       290       300       310         
pF1KE2 ELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTCPVCRYCQTPEPVEENKCFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTCPVCRYCQTPEPVEENKCFE
              310       320       330       340       350       360

     320       330       340       350       360       370         
pF1KE2 CGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAGDNYVHRLVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAGDNYVHRLVA
              370       380       390       400       410       420

     380       390       400       410       420       430         
pF1KE2 SKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQRIYWENKIVRIEKDTAEEIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQRIYWENKIVRIEKDTAEEIN
              430       440       450       460       470       480

     440       450       460       470       480       490         
pF1KE2 NMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTKVAKLTNELKEEQEMNKCLRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTKVAKLTNELKEEQEMNKCLRA
              490       500       510       520       530       540

     500       510       520       530       540       550         
pF1KE2 NQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFYLETQQKINHLPAETRQEIQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFYLETQQKINHLPAETRQEIQE
              550       560       570       580       590       600

     560       570       580       590  
pF1KE2 GQINIAMASASSPASSGGSGKLPSRKGRSKRGK
       :::::::::::::::::::::::::::::::::
XP_005 GQINIAMASASSPASSGGSGKLPSRKGRSKRGK
              610       620       630   

>>XP_016875481 (OMIM: 604986) PREDICTED: BRCA1-associate  (538 aa)
 initn: 3429 init1: 3429 opt: 3429  Z-score: 2019.8  bits: 383.6 E(85289): 9.2e-106
Smith-Waterman score: 3476; 90.9% identity (90.9% similar) in 592 aa overlap (1-592:1-538)

               10        20        30        40        50        60
pF1KE2 MSVSLVVIRLELAEHSPVPAGFGFSAAAGEMSDEEIKKTTLASAVACLEGKSPGEKVAII
       :::::::::::::::::::::::::::                                 
XP_016 MSVSLVVIRLELAEHSPVPAGFGFSAA---------------------------------
               10        20                                        

               70        80        90       100       110       120
pF1KE2 HQHLGRREMTDVIIETMKSNPDELKTTVEERKSSEASPTAQRSKDHSKECINAAPDSPSK
                            :::::::::::::::::::::::::::::::::::::::
XP_016 ---------------------DELKTTVEERKSSEASPTAQRSKDHSKECINAAPDSPSK
                             30        40        50        60      

              130       140       150       160       170       180
pF1KE2 QLPDQISFFSGNPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCILTVPAAMTSHDLMKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLPDQISFFSGNPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCILTVPAAMTSHDLMKF
         70        80        90       100       110       120      

              190       200       210       220       230       240
pF1KE2 VAPFNEVIEQMKIIRDSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VAPFNEVIEQMKIIRDSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYVE
        130       140       150       160       170       180      

              250       260       270       280       290       300
pF1KE2 RAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTC
        190       200       210       220       230       240      

              310       320       330       340       350       360
pF1KE2 PVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQL
        250       260       270       280       290       300      

              370       380       390       400       410       420
pF1KE2 TNHRVWDYAGDNYVHRLVASKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNHRVWDYAGDNYVHRLVASKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQR
        310       320       330       340       350       360      

              430       440       450       460       470       480
pF1KE2 IYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTKV
        370       380       390       400       410       420      

              490       500       510       520       530       540
pF1KE2 AKLTNELKEEQEMNKCLRANQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKLTNELKEEQEMNKCLRANQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFYL
        430       440       450       460       470       480      

              550       560       570       580       590  
pF1KE2 ETQQKINHLPAETRQEIQEGQINIAMASASSPASSGGSGKLPSRKGRSKRGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ETQQKINHLPAETRQEIQEGQINIAMASASSPASSGGSGKLPSRKGRSKRGK
        490       500       510       520       530        

>>XP_016875482 (OMIM: 604986) PREDICTED: BRCA1-associate  (443 aa)
 initn: 2980 init1: 2980 opt: 2980  Z-score: 1759.4  bits: 335.1 E(85289): 2.9e-91
Smith-Waterman score: 2980; 100.0% identity (100.0% similar) in 443 aa overlap (150-592:1-443)

     120       130       140       150       160       170         
pF1KE2 KQLPDQISFFSGNPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCILTVPAAMTSHDLMK
                                     ::::::::::::::::::::::::::::::
XP_016                               MTSLKEDVRRSAMLCILTVPAAMTSHDLMK
                                             10        20        30

     180       190       200       210       220       230         
pF1KE2 FVAPFNEVIEQMKIIRDSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FVAPFNEVIEQMKIIRDSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYV
               40        50        60        70        80        90

     240       250       260       270       280       290         
pF1KE2 ERAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTT
              100       110       120       130       140       150

     300       310       320       330       340       350         
pF1KE2 CPVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CPVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQ
              160       170       180       190       200       210

     360       370       380       390       400       410         
pF1KE2 LTNHRVWDYAGDNYVHRLVASKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTNHRVWDYAGDNYVHRLVASKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQ
              220       230       240       250       260       270

     420       430       440       450       460       470         
pF1KE2 RIYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RIYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTK
              280       290       300       310       320       330

     480       490       500       510       520       530         
pF1KE2 VAKLTNELKEEQEMNKCLRANQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VAKLTNELKEEQEMNKCLRANQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFY
              340       350       360       370       380       390

     540       550       560       570       580       590  
pF1KE2 LETQQKINHLPAETRQEIQEGQINIAMASASSPASSGGSGKLPSRKGRSKRGK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LETQQKINHLPAETRQEIQEGQINIAMASASSPASSGGSGKLPSRKGRSKRGK
              400       410       420       430       440   

>>XP_016875484 (OMIM: 604986) PREDICTED: BRCA1-associate  (443 aa)
 initn: 2980 init1: 2980 opt: 2980  Z-score: 1759.4  bits: 335.1 E(85289): 2.9e-91
Smith-Waterman score: 2980; 100.0% identity (100.0% similar) in 443 aa overlap (150-592:1-443)

     120       130       140       150       160       170         
pF1KE2 KQLPDQISFFSGNPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCILTVPAAMTSHDLMK
                                     ::::::::::::::::::::::::::::::
XP_016                               MTSLKEDVRRSAMLCILTVPAAMTSHDLMK
                                             10        20        30

     180       190       200       210       220       230         
pF1KE2 FVAPFNEVIEQMKIIRDSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FVAPFNEVIEQMKIIRDSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYV
               40        50        60        70        80        90

     240       250       260       270       280       290         
pF1KE2 ERAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTT
              100       110       120       130       140       150

     300       310       320       330       340       350         
pF1KE2 CPVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CPVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQ
              160       170       180       190       200       210

     360       370       380       390       400       410         
pF1KE2 LTNHRVWDYAGDNYVHRLVASKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTNHRVWDYAGDNYVHRLVASKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQ
              220       230       240       250       260       270

     420       430       440       450       460       470         
pF1KE2 RIYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RIYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTK
              280       290       300       310       320       330

     480       490       500       510       520       530         
pF1KE2 VAKLTNELKEEQEMNKCLRANQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VAKLTNELKEEQEMNKCLRANQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFY
              340       350       360       370       380       390

     540       550       560       570       580       590  
pF1KE2 LETQQKINHLPAETRQEIQEGQINIAMASASSPASSGGSGKLPSRKGRSKRGK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LETQQKINHLPAETRQEIQEGQINIAMASASSPASSGGSGKLPSRKGRSKRGK
              400       410       420       430       440   

>>XP_016875483 (OMIM: 604986) PREDICTED: BRCA1-associate  (443 aa)
 initn: 2980 init1: 2980 opt: 2980  Z-score: 1759.4  bits: 335.1 E(85289): 2.9e-91
Smith-Waterman score: 2980; 100.0% identity (100.0% similar) in 443 aa overlap (150-592:1-443)

     120       130       140       150       160       170         
pF1KE2 KQLPDQISFFSGNPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCILTVPAAMTSHDLMK
                                     ::::::::::::::::::::::::::::::
XP_016                               MTSLKEDVRRSAMLCILTVPAAMTSHDLMK
                                             10        20        30

     180       190       200       210       220       230         
pF1KE2 FVAPFNEVIEQMKIIRDSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FVAPFNEVIEQMKIIRDSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYV
               40        50        60        70        80        90

     240       250       260       270       280       290         
pF1KE2 ERAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTT
              100       110       120       130       140       150

     300       310       320       330       340       350         
pF1KE2 CPVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CPVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQ
              160       170       180       190       200       210

     360       370       380       390       400       410         
pF1KE2 LTNHRVWDYAGDNYVHRLVASKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTNHRVWDYAGDNYVHRLVASKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQ
              220       230       240       250       260       270

     420       430       440       450       460       470         
pF1KE2 RIYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RIYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTK
              280       290       300       310       320       330

     480       490       500       510       520       530         
pF1KE2 VAKLTNELKEEQEMNKCLRANQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VAKLTNELKEEQEMNKCLRANQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFY
              340       350       360       370       380       390

     540       550       560       570       580       590  
pF1KE2 LETQQKINHLPAETRQEIQEGQINIAMASASSPASSGGSGKLPSRKGRSKRGK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LETQQKINHLPAETRQEIQEGQINIAMASASSPASSGGSGKLPSRKGRSKRGK
              400       410       420       430       440   

>>XP_011537091 (OMIM: 604986) PREDICTED: BRCA1-associate  (305 aa)
 initn: 1976 init1: 1976 opt: 1976  Z-score: 1177.0  bits: 226.8 E(85289): 8.1e-59
Smith-Waterman score: 1976; 100.0% identity (100.0% similar) in 293 aa overlap (300-592:13-305)

     270       280       290       300       310       320         
pF1KE2 RMDESVNGILTTLCNHSFHSQCLQRWDDTTCPVCRYCQTPEPVEENKCFECGVQENLWIC
                                     ::::::::::::::::::::::::::::::
XP_011                   MWKELKCSNLKMCPVCRYCQTPEPVEENKCFECGVQENLWIC
                                 10        20        30        40  

     330       340       350       360       370       380         
pF1KE2 LICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAGDNYVHRLVASKTDGKIVQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAGDNYVHRLVASKTDGKIVQY
             50        60        70        80        90       100  

     390       400       410       420       430       440         
pF1KE2 ECEGDTCQEEKIDALQLEYSYLLTSQLESQRIYWENKIVRIEKDTAEEINNMKTKFKETI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ECEGDTCQEEKIDALQLEYSYLLTSQLESQRIYWENKIVRIEKDTAEEINNMKTKFKETI
            110       120       130       140       150       160  

     450       460       470       480       490       500         
pF1KE2 EKCDNLEHKLNDLLKEKQSVERKCTQLNTKVAKLTNELKEEQEMNKCLRANQVLLQNKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKCDNLEHKLNDLLKEKQSVERKCTQLNTKVAKLTNELKEEQEMNKCLRANQVLLQNKLK
            170       180       190       200       210       220  

     510       520       530       540       550       560         
pF1KE2 EEERVLKETCDQKDLQITEIQEQLRDVMFYLETQQKINHLPAETRQEIQEGQINIAMASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEERVLKETCDQKDLQITEIQEQLRDVMFYLETQQKINHLPAETRQEIQEGQINIAMASA
            230       240       250       260       270       280  

     570       580       590  
pF1KE2 SSPASSGGSGKLPSRKGRSKRGK
       :::::::::::::::::::::::
XP_011 SSPASSGGSGKLPSRKGRSKRGK
            290       300     




592 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:42:36 2016 done: Sun Nov  6 14:42:37 2016
 Total Scan time:  8.330 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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