FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5150, 86 aa 1>>>pF1KE5150 86 - 86 aa - 86 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.3015+/-0.000262; mu= 12.7841+/- 0.016 mean_var=44.3994+/- 8.746, 0's: 0 Z-trim(118.7): 28 B-trim: 25 in 1/53 Lambda= 0.192480 statistics sampled from 31991 (32024) to 31991 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.375), width: 16 Scan time: 3.840 The best scores are: opt bits E(85289) NP_003086 (OMIM: 603541) small nuclear ribonucleop ( 86) 578 166.7 4.1e-42 XP_016863161 (OMIM: 607286) PREDICTED: U6 snRNA-as ( 80) 238 72.3 1e-13 XP_016863162 (OMIM: 607286) PREDICTED: U6 snRNA-as ( 80) 238 72.3 1e-13 NP_009011 (OMIM: 607286) U6 snRNA-associated Sm-li ( 80) 238 72.3 1e-13 NP_036453 (OMIM: 607284) U6 snRNA-associated Sm-li ( 139) 118 39.1 0.0017 >>NP_003086 (OMIM: 603541) small nuclear ribonucleoprote (86 aa) initn: 578 init1: 578 opt: 578 Z-score: 877.1 bits: 166.7 E(85289): 4.1e-42 Smith-Waterman score: 578; 100.0% identity (100.0% similar) in 86 aa overlap (1-86:1-86) 10 20 30 40 50 60 pF1KE5 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 10 20 30 40 50 60 70 80 pF1KE5 EVLIRCNNVLYIRGVEEEEEDGEMRE :::::::::::::::::::::::::: NP_003 EVLIRCNNVLYIRGVEEEEEDGEMRE 70 80 >>XP_016863161 (OMIM: 607286) PREDICTED: U6 snRNA-associ (80 aa) initn: 236 init1: 236 opt: 238 Z-score: 367.3 bits: 72.3 E(85289): 1e-13 Smith-Waterman score: 238; 50.7% identity (80.8% similar) in 73 aa overlap (1-72:1-73) 10 20 30 40 50 pF1KE5 MSL-PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL ::: .:. ::. . :.::.:::. :..:.: :. .:::::. : .::::..: :... XP_016 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 10 20 30 40 50 60 60 70 80 pF1KE5 GEVLIRCNNVLYIRGVEEEEEDGEMRE :...:: :::::: XP_016 GDAFIRGNNVLYISTQKRRM 70 80 >>XP_016863162 (OMIM: 607286) PREDICTED: U6 snRNA-associ (80 aa) initn: 236 init1: 236 opt: 238 Z-score: 367.3 bits: 72.3 E(85289): 1e-13 Smith-Waterman score: 238; 50.7% identity (80.8% similar) in 73 aa overlap (1-72:1-73) 10 20 30 40 50 pF1KE5 MSL-PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL ::: .:. ::. . :.::.:::. :..:.: :. .:::::. : .::::..: :... XP_016 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 10 20 30 40 50 60 60 70 80 pF1KE5 GEVLIRCNNVLYIRGVEEEEEDGEMRE :...:: :::::: XP_016 GDAFIRGNNVLYISTQKRRM 70 80 >>NP_009011 (OMIM: 607286) U6 snRNA-associated Sm-like p (80 aa) initn: 236 init1: 236 opt: 238 Z-score: 367.3 bits: 72.3 E(85289): 1e-13 Smith-Waterman score: 238; 50.7% identity (80.8% similar) in 73 aa overlap (1-72:1-73) 10 20 30 40 50 pF1KE5 MSL-PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL ::: .:. ::. . :.::.:::. :..:.: :. .:::::. : .::::..: :... NP_009 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 10 20 30 40 50 60 60 70 80 pF1KE5 GEVLIRCNNVLYIRGVEEEEEDGEMRE :...:: :::::: NP_009 GDAFIRGNNVLYISTQKRRM 70 80 >>NP_036453 (OMIM: 607284) U6 snRNA-associated Sm-like p (139 aa) initn: 99 init1: 75 opt: 118 Z-score: 183.7 bits: 39.1 E(85289): 0.0017 Smith-Waterman score: 118; 34.7% identity (61.3% similar) in 75 aa overlap (7-77:3-74) 10 20 30 40 50 pF1KE5 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYI----DGALS : .:. ..:..:.:: : :.:.::: :..::. : .: : :: NP_036 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNI---NLREVICTSRDGDKF 10 20 30 40 50 60 70 80 pF1KE5 GHLGEVLIRCNNVLYIRGVEEEEEDGEMRE .. : :: ... :.: .: NP_036 WRMPECYIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFG 60 70 80 90 100 110 86 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:59:48 2016 done: Mon Nov 7 21:59:49 2016 Total Scan time: 3.840 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]