FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5150, 86 aa 1>>>pF1KE5150 86 - 86 aa - 86 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6279+/-0.000511; mu= 10.8714+/- 0.031 mean_var=44.0252+/- 8.759, 0's: 0 Z-trim(111.8): 20 B-trim: 0 in 0/51 Lambda= 0.193296 statistics sampled from 12648 (12665) to 12648 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.389), width: 16 Scan time: 1.170 The best scores are: opt bits E(32554) CCDS9055.1 SNRPF gene_id:6636|Hs108|chr12 ( 86) 578 167.5 9.4e-43 CCDS3767.1 LSM6 gene_id:11157|Hs108|chr4 ( 80) 238 72.6 3.1e-14 >>CCDS9055.1 SNRPF gene_id:6636|Hs108|chr12 (86 aa) initn: 578 init1: 578 opt: 578 Z-score: 881.0 bits: 167.5 E(32554): 9.4e-43 Smith-Waterman score: 578; 100.0% identity (100.0% similar) in 86 aa overlap (1-86:1-86) 10 20 30 40 50 60 pF1KE5 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 10 20 30 40 50 60 70 80 pF1KE5 EVLIRCNNVLYIRGVEEEEEDGEMRE :::::::::::::::::::::::::: CCDS90 EVLIRCNNVLYIRGVEEEEEDGEMRE 70 80 >>CCDS3767.1 LSM6 gene_id:11157|Hs108|chr4 (80 aa) initn: 236 init1: 236 opt: 238 Z-score: 369.1 bits: 72.6 E(32554): 3.1e-14 Smith-Waterman score: 238; 50.7% identity (80.8% similar) in 73 aa overlap (1-72:1-73) 10 20 30 40 50 pF1KE5 MSL-PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL ::: .:. ::. . :.::.:::. :..:.: :. .:::::. : .::::..: :... CCDS37 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 10 20 30 40 50 60 60 70 80 pF1KE5 GEVLIRCNNVLYIRGVEEEEEDGEMRE :...:: :::::: CCDS37 GDAFIRGNNVLYISTQKRRM 70 80 86 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:59:48 2016 done: Mon Nov 7 21:59:48 2016 Total Scan time: 1.170 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]