FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1661, 179 aa 1>>>pF1KE1661 179 - 179 aa - 179 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9416+/-0.000362; mu= 14.7650+/- 0.022 mean_var=61.7818+/-12.270, 0's: 0 Z-trim(113.0): 14 B-trim: 0 in 0/55 Lambda= 0.163171 statistics sampled from 22147 (22156) to 22147 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.26), width: 16 Scan time: 5.630 The best scores are: opt bits E(85289) NP_065386 (OMIM: 605330) interleukin-22 precursor ( 179) 1155 280.1 1.3e-75 NP_000563 (OMIM: 124092,180300,609423,614395) inte ( 178) 137 40.5 0.0018 >>NP_065386 (OMIM: 605330) interleukin-22 precursor [Hom (179 aa) initn: 1155 init1: 1155 opt: 1155 Z-score: 1478.6 bits: 280.1 E(85289): 1.3e-75 Smith-Waterman score: 1155; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179) 10 20 30 40 50 60 pF1KE1 MAALQKSVSSFLMGTLATSCLLLLALLVQGGAAAPISSHCRLDKSNFQQPYITNRTFMLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 MAALQKSVSSFLMGTLATSCLLLLALLVQGGAAAPISSHCRLDKSNFQQPYITNRTFMLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KEASLADNNTDVRLIGEKLFHGVSMSERCYLMKQVLNFTLEEVLFPQSDRFQPYMQEVVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 KEASLADNNTDVRLIGEKLFHGVSMSERCYLMKQVLNFTLEEVLFPQSDRFQPYMQEVVP 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 FLARLSNRLSTCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGELDLLFMSLRNACI ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 FLARLSNRLSTCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGELDLLFMSLRNACI 130 140 150 160 170 >>NP_000563 (OMIM: 124092,180300,609423,614395) interleu (178 aa) initn: 95 init1: 80 opt: 137 Z-score: 183.4 bits: 40.5 E(85289): 0.0018 Smith-Waterman score: 137; 25.5% identity (56.7% similar) in 157 aa overlap (20-170:9-164) 10 20 30 40 50 pF1KE1 MAALQKSVSSFLMGTLATSCLLLLA-LLVQGGAAAPISSHCRLDKSNFQQPYITNR-TFM ::.::. . .. : .. . : .:. . : .: NP_000 MHSSALLCCLVLLTGVRASPGQGTQSENSCTHFPGNLPNMLRDLRDAFS 10 20 30 40 60 70 80 90 100 110 pF1KE1 LAKEASLADNNTDVRLIGEKLFHGVSMSERCYLMKQVLNFTLEEVLFPQSDRFQPYMQEV .: .. : :. :.:.. . : ......: ::::. ::.. .: .. NP_000 RVKTFFQMKDQLDNLLLKESLLEDFKGYLGCQALSEMIQFYLEEVM-PQAENQDPDIKAH 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 VPFLAR----LSNRLSTCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGELDLLFMSL : :.. : :: :: . .. :...:.. .:: :.: ::..:.:.. NP_000 VNSLGENLKTLRLRLRRCHRFLPCENKSKAVEQVKNAFNKLQEKGIYKAMSEFDIFINYI 110 120 130 140 150 160 pF1KE1 RNACI NP_000 EAYMTMKIRN 170 179 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 14:46:29 2016 done: Sun Nov 6 14:46:30 2016 Total Scan time: 5.630 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]