FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6827, 166 aa 1>>>pF1KB6827 166 - 166 aa - 166 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4686+/-0.000857; mu= 11.7471+/- 0.051 mean_var=67.8919+/-13.195, 0's: 0 Z-trim(106.4): 14 B-trim: 0 in 0/52 Lambda= 0.155656 statistics sampled from 8956 (8959) to 8956 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.275), width: 16 Scan time: 1.550 The best scores are: opt bits E(32554) CCDS8980.1 IFNG gene_id:3458|Hs108|chr12 ( 166) 1085 252.2 1.1e-67 >>CCDS8980.1 IFNG gene_id:3458|Hs108|chr12 (166 aa) initn: 1085 init1: 1085 opt: 1085 Z-score: 1328.7 bits: 252.2 E(32554): 1.1e-67 Smith-Waterman score: 1085; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166) 10 20 30 40 50 60 pF1KB6 MKYTSYILAFQLCIVLGSLGCYCQDPYVKEAENLKKYFNAGHSDVADNGTLFLGILKNWK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 MKYTSYILAFQLCIVLGSLGCYCQDPYVKEAENLKKYFNAGHSDVADNGTLFLGILKNWK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 EESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 EESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTN 70 80 90 100 110 120 130 140 150 160 pF1KB6 YSVTDLNVQRKAIHELIQVMAELSPAAKTGKRKRSQMLFRGRRASQ :::::::::::::::::::::::::::::::::::::::::::::: CCDS89 YSVTDLNVQRKAIHELIQVMAELSPAAKTGKRKRSQMLFRGRRASQ 130 140 150 160 166 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 14:47:01 2016 done: Sun Nov 6 14:47:01 2016 Total Scan time: 1.550 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]