Result of FASTA (ccds) for pFN21AB6827
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6827, 166 aa
  1>>>pF1KB6827 166 - 166 aa - 166 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4686+/-0.000857; mu= 11.7471+/- 0.051
 mean_var=67.8919+/-13.195, 0's: 0 Z-trim(106.4): 14  B-trim: 0 in 0/52
 Lambda= 0.155656
 statistics sampled from 8956 (8959) to 8956 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.275), width:  16
 Scan time:  1.550

The best scores are:                                      opt bits E(32554)
CCDS8980.1 IFNG gene_id:3458|Hs108|chr12           ( 166) 1085 252.2 1.1e-67


>>CCDS8980.1 IFNG gene_id:3458|Hs108|chr12                (166 aa)
 initn: 1085 init1: 1085 opt: 1085  Z-score: 1328.7  bits: 252.2 E(32554): 1.1e-67
Smith-Waterman score: 1085; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KB6 MKYTSYILAFQLCIVLGSLGCYCQDPYVKEAENLKKYFNAGHSDVADNGTLFLGILKNWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MKYTSYILAFQLCIVLGSLGCYCQDPYVKEAENLKKYFNAGHSDVADNGTLFLGILKNWK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 EESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTN
               70        80        90       100       110       120

              130       140       150       160      
pF1KB6 YSVTDLNVQRKAIHELIQVMAELSPAAKTGKRKRSQMLFRGRRASQ
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 YSVTDLNVQRKAIHELIQVMAELSPAAKTGKRKRSQMLFRGRRASQ
              130       140       150       160      




166 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:47:01 2016 done: Sun Nov  6 14:47:01 2016
 Total Scan time:  1.550 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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