FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4387, 408 aa
  1>>>pF1KE4387 408 - 408 aa - 408 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0866+/-0.00102; mu= 18.1092+/- 0.061
 mean_var=60.8080+/-13.177, 0's: 0 Z-trim(102.9): 28  B-trim: 398 in 1/46
 Lambda= 0.164473
 statistics sampled from 7172 (7180) to 7172 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.573), E-opt: 0.2 (0.221), width:  16
 Scan time:  2.770

The best scores are:                                      opt bits E(32554)
CCDS8411.1 DPAGT1 gene_id:1798|Hs108|chr11         ( 408) 2711 652.1 2.7e-187


>>CCDS8411.1 DPAGT1 gene_id:1798|Hs108|chr11              (408 aa)
 initn: 2711 init1: 2711 opt: 2711  Z-score: 3475.9  bits: 652.1 E(32554): 2.7e-187
Smith-Waterman score: 2711; 100.0% identity (100.0% similar) in 408 aa overlap (1-408:1-408)

               10        20        30        40        50        60
pF1KE4 MWAFSELPMPLLINLIVSLLGFVATVTLIPAFRGHFIAARLCGQDLNKTSRQQIPESQGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MWAFSELPMPLLINLIVSLLGFVATVTLIPAFRGHFIAARLCGQDLNKTSRQQIPESQGV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 ISGAVFLIILFCFIPFPFLNCFVKEQCKAFPHHEFVALIGALLAICCMIFLGFADDVLNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 ISGAVFLIILFCFIPFPFLNCFVKEQCKAFPHHEFVALIGALLAICCMIFLGFADDVLNL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 RWRHKLLLPTAASLPLLMVYFTNFGNTTIVVPKPFRPILGLHLDLGILYYVYMGLLAVFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 RWRHKLLLPTAASLPLLMVYFTNFGNTTIVVPKPFRPILGLHLDLGILYYVYMGLLAVFC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 TNAINILAGINGLEAGQSLVISASIIVFNLVELEGDCRDDHVFSLYFMIPFFFTTLGLLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 TNAINILAGINGLEAGQSLVISASIIVFNLVELEGDCRDDHVFSLYFMIPFFFTTLGLLY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 HNWYPSRVFVGDTFCYFAGMTFAVVGILGHFSKTMLLFFMPQVFNFLYSLPQLLHIIPCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 HNWYPSRVFVGDTFCYFAGMTFAVVGILGHFSKTMLLFFMPQVFNFLYSLPQLLHIIPCP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 RHRIPRLNIKTGKLEMSYSKFKTKSLSFLGTFILKVAESLQLVTVHQSETEDGEFTECNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 RHRIPRLNIKTGKLEMSYSKFKTKSLSFLGTFILKVAESLQLVTVHQSETEDGEFTECNN
              310       320       330       340       350       360

              370       380       390       400        
pF1KE4 MTLINLLLKVLGPIHERNLTLLLLLLQILGSAITFSIRYQLVRLFYDV
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MTLINLLLKVLGPIHERNLTLLLLLLQILGSAITFSIRYQLVRLFYDV
              370       380       390       400        




408 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:57:00 2016 done: Sat Nov  5 22:57:00 2016
 Total Scan time:  2.770 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]