FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1729, 237 aa 1>>>pF1KE1729 237 - 237 aa - 237 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5527+/-0.000646; mu= 14.2452+/- 0.040 mean_var=83.3571+/-16.636, 0's: 0 Z-trim(112.9): 7 B-trim: 578 in 1/51 Lambda= 0.140476 statistics sampled from 13590 (13594) to 13590 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.418), width: 16 Scan time: 1.860 The best scores are: opt bits E(32554) CCDS8252.1 CLNS1A gene_id:1207|Hs108|chr11 ( 237) 1591 331.3 3.5e-91 CCDS81602.1 CLNS1A gene_id:1207|Hs108|chr11 ( 179) 1074 226.4 9.7e-60 CCDS81601.1 CLNS1A gene_id:1207|Hs108|chr11 ( 203) 783 167.5 6.1e-42 CCDS81600.1 CLNS1A gene_id:1207|Hs108|chr11 ( 167) 607 131.7 2.8e-31 >>CCDS8252.1 CLNS1A gene_id:1207|Hs108|chr11 (237 aa) initn: 1591 init1: 1591 opt: 1591 Z-score: 1750.6 bits: 331.3 E(32554): 3.5e-91 Smith-Waterman score: 1591; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237) 10 20 30 40 50 60 pF1KE1 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH 190 200 210 220 230 >>CCDS81602.1 CLNS1A gene_id:1207|Hs108|chr11 (179 aa) initn: 1243 init1: 1071 opt: 1074 Z-score: 1186.0 bits: 226.4 E(32554): 9.7e-60 Smith-Waterman score: 1093; 75.5% identity (75.5% similar) in 237 aa overlap (1-237:1-179) 10 20 30 40 50 60 pF1KE1 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE ::::::::::::::::::::::::::::::::::::: CCDS81 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAH----------------------- 130 140 150 190 200 210 220 230 pF1KE1 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH :::::::::::::::::::::: CCDS81 -----------------------------------DGMEVDTTPTVAGQFEDADVDH 160 170 >>CCDS81601.1 CLNS1A gene_id:1207|Hs108|chr11 (203 aa) initn: 804 init1: 782 opt: 783 Z-score: 866.5 bits: 167.5 E(32554): 6.1e-42 Smith-Waterman score: 1287; 85.2% identity (85.7% similar) in 237 aa overlap (1-237:1-203) 10 20 30 40 50 60 pF1KE1 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS ::::::::::::::::::::::::::: CCDS81 ISLHALSRDRSDCLGEHLYVMVNAKFE--------------------------------- 70 80 130 140 150 160 170 180 pF1KE1 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 -VEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE 90 100 110 120 130 140 190 200 210 220 230 pF1KE1 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH 150 160 170 180 190 200 >>CCDS81600.1 CLNS1A gene_id:1207|Hs108|chr11 (167 aa) initn: 648 init1: 595 opt: 607 Z-score: 674.9 bits: 131.7 E(32554): 2.8e-31 Smith-Waterman score: 957; 70.5% identity (70.5% similar) in 237 aa overlap (1-237:1-167) 10 20 30 40 50 60 pF1KE1 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS :::::::::::::::::::::::::::: CCDS81 ISLHALSRDRSDCLGEHLYVMVNAKFEE-------------------------------- 70 80 130 140 150 160 170 180 pF1KE1 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE :::::::::::::::::::::: CCDS81 --------------------------------------QGQGDIPTFYTYEEGLSHLTAE 90 100 110 190 200 210 220 230 pF1KE1 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH 120 130 140 150 160 237 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:03:57 2016 done: Sun Nov 6 15:03:57 2016 Total Scan time: 1.860 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]