Result of FASTA (omim) for pFN21AE6194
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6194, 69 aa
  1>>>pF1KE6194 69 - 69 aa - 69 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6698+/-0.000229; mu= 9.9735+/- 0.014
 mean_var=48.6632+/- 9.620, 0's: 0 Z-trim(123.3): 5  B-trim: 0 in 0/53
 Lambda= 0.183854
 statistics sampled from 42773 (42778) to 42773 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.87), E-opt: 0.2 (0.502), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(85289)
NP_004065 (OMIM: 123870) cytochrome c oxidase subu (  69)  457 127.4 1.8e-30
NP_892016 (OMIM: 616855) cytochrome c oxidase subu (  72)  137 42.5 6.8e-05


>>NP_004065 (OMIM: 123870) cytochrome c oxidase subunit   (69 aa)
 initn: 457 init1: 457 opt: 457  Z-score: 667.9  bits: 127.4 E(85289): 1.8e-30
Smith-Waterman score: 457; 100.0% identity (100.0% similar) in 69 aa overlap (1-69:1-69)

               10        20        30        40        50        60
pF1KE6 MSVLTPLLLRGLTGSARRLPVPRAKIHSLPPEGKLGIMELAVGLTSCFVTFLLPAGWILS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSVLTPLLLRGLTGSARRLPVPRAKIHSLPPEGKLGIMELAVGLTSCFVTFLLPAGWILS
               10        20        30        40        50        60

                
pF1KE6 HLETYRRPE
       :::::::::
NP_004 HLETYRRPE
                

>>NP_892016 (OMIM: 616855) cytochrome c oxidase subunit   (72 aa)
 initn: 141 init1: 125 opt: 137  Z-score: 208.8  bits: 42.5 E(85289): 6.8e-05
Smith-Waterman score: 137; 46.9% identity (75.5% similar) in 49 aa overlap (20-67:24-71)

                   10        20        30         40        50     
pF1KE6     MSVLTPLLLRGLTGSARRLPVPRAKIHSLPPEGK-LGIMELAVGLTSCFVTFLLPA
                              :.::   :: ::. . :.  :.::::.  :.::: ::
NP_892 MPLLRGRCPARRHYRRLALLGLQPAPRFA-HSGPPRQRPLSAAEMAVGLVVFFTTFLTPA
               10        20         30        40        50         

          60         
pF1KE6 GWILSHLETYRRPE
       ...:..:. .::  
NP_892 AYVLGNLKQFRRN 
      60        70   




69 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:14:34 2016 done: Tue Nov  8 10:14:34 2016
 Total Scan time:  2.590 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com