FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2410, 286 aa 1>>>pF1KE2410 286 - 286 aa - 286 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4056+/-0.000309; mu= 14.9128+/- 0.019 mean_var=72.6029+/-15.081, 0's: 0 Z-trim(117.1): 13 B-trim: 1696 in 1/52 Lambda= 0.150521 statistics sampled from 28874 (28887) to 28874 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.339), width: 16 Scan time: 7.330 The best scores are: opt bits E(85289) NP_631917 (OMIM: 610603) alpha-ketoglutarate-depen ( 286) 2009 445.1 7.1e-125 NP_001138846 (OMIM: 610602) DNA oxidative demethyl ( 261) 377 90.7 3.2e-18 NP_001001655 (OMIM: 610602) DNA oxidative demethyl ( 261) 377 90.7 3.2e-18 NP_001138847 (OMIM: 610602) DNA oxidative demethyl ( 261) 377 90.7 3.2e-18 XP_005253892 (OMIM: 610602) PREDICTED: DNA oxidati ( 261) 377 90.7 3.2e-18 >>NP_631917 (OMIM: 610603) alpha-ketoglutarate-dependent (286 aa) initn: 2009 init1: 2009 opt: 2009 Z-score: 2362.8 bits: 445.1 E(85289): 7.1e-125 Smith-Waterman score: 2009; 99.7% identity (100.0% similar) in 286 aa overlap (1-286:1-286) 10 20 30 40 50 60 pF1KE2 MEEKRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQKPGQTWKNKEHHLSDREFVFKEPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_631 MEEKRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQKPGQTWKNKEHHLSDREFVFKEPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 QVVRRAPEPRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_631 QVVRRAPEPRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 IREDITYQQPRLTAWYGELPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_631 IREDITYQQPRLTAWYGELPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 YRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGEYTYVERVKIPLD :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: NP_631 YRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLD 190 200 210 220 230 240 250 260 270 280 pF1KE2 HGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDPRGAPW :::::::::::::::::::::::::::::::::::::::::::::: NP_631 HGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDPRGAPW 250 260 270 280 >>NP_001138846 (OMIM: 610602) DNA oxidative demethylase (261 aa) initn: 339 init1: 163 opt: 377 Z-score: 448.1 bits: 90.7 E(85289): 3.2e-18 Smith-Waterman score: 377; 37.0% identity (60.9% similar) in 192 aa overlap (91-277:67-256) 70 80 90 100 110 120 pF1KE2 QVVRRAPEPRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTG : : . ::: :...: ..: . . NP_001 TRKRPRREAPGNGGHSAGPSWRHIRAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGAL 40 50 60 70 80 90 130 140 150 160 170 pF1KE2 IREDIT---YQQPRLTAWYGE--LPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNS : .. .. :: : ::. : ::.: .:. :.: : :::. ..... ::.::: NP_001 ARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKP-WIPVLERIRDHVSGVTGQTFNF 100 110 120 130 140 150 180 190 200 210 220 230 pF1KE2 LLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGEYTYVERV .: : :.. : . : ::: :. :::.:::: : : .:.: . .. : : NP_001 VLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDS-RGKSPSRRVAVV 160 170 180 190 200 210 240 250 260 270 280 pF1KE2 KIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDPRGAPW ..:: ::.::.:. :.. : : .: . . :::::::: . NP_001 RLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLTKK 220 230 240 250 260 >>NP_001001655 (OMIM: 610602) DNA oxidative demethylase (261 aa) initn: 339 init1: 163 opt: 377 Z-score: 448.1 bits: 90.7 E(85289): 3.2e-18 Smith-Waterman score: 377; 37.0% identity (60.9% similar) in 192 aa overlap (91-277:67-256) 70 80 90 100 110 120 pF1KE2 QVVRRAPEPRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTG : : . ::: :...: ..: . . NP_001 TRKRPRREAPGNGGHSAGPSWRHIRAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGAL 40 50 60 70 80 90 130 140 150 160 170 pF1KE2 IREDIT---YQQPRLTAWYGE--LPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNS : .. .. :: : ::. : ::.: .:. :.: : :::. ..... ::.::: NP_001 ARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKP-WIPVLERIRDHVSGVTGQTFNF 100 110 120 130 140 150 180 190 200 210 220 230 pF1KE2 LLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGEYTYVERV .: : :.. : . : ::: :. :::.:::: : : .:.: . .. : : NP_001 VLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDS-RGKSPSRRVAVV 160 170 180 190 200 210 240 250 260 270 280 pF1KE2 KIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDPRGAPW ..:: ::.::.:. :.. : : .: . . :::::::: . NP_001 RLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLTKK 220 230 240 250 260 >>NP_001138847 (OMIM: 610602) DNA oxidative demethylase (261 aa) initn: 339 init1: 163 opt: 377 Z-score: 448.1 bits: 90.7 E(85289): 3.2e-18 Smith-Waterman score: 377; 37.0% identity (60.9% similar) in 192 aa overlap (91-277:67-256) 70 80 90 100 110 120 pF1KE2 QVVRRAPEPRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTG : : . ::: :...: ..: . . NP_001 TRKRPRREAPGNGGHSAGPSWRHIRAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGAL 40 50 60 70 80 90 130 140 150 160 170 pF1KE2 IREDIT---YQQPRLTAWYGE--LPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNS : .. .. :: : ::. : ::.: .:. :.: : :::. ..... ::.::: NP_001 ARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKP-WIPVLERIRDHVSGVTGQTFNF 100 110 120 130 140 150 180 190 200 210 220 230 pF1KE2 LLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGEYTYVERV .: : :.. : . : ::: :. :::.:::: : : .:.: . .. : : NP_001 VLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDS-RGKSPSRRVAVV 160 170 180 190 200 210 240 250 260 270 280 pF1KE2 KIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDPRGAPW ..:: ::.::.:. :.. : : .: . . :::::::: . NP_001 RLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLTKK 220 230 240 250 260 >>XP_005253892 (OMIM: 610602) PREDICTED: DNA oxidative d (261 aa) initn: 339 init1: 163 opt: 377 Z-score: 448.1 bits: 90.7 E(85289): 3.2e-18 Smith-Waterman score: 377; 37.0% identity (60.9% similar) in 192 aa overlap (91-277:67-256) 70 80 90 100 110 120 pF1KE2 QVVRRAPEPRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTG : : . ::: :...: ..: . . XP_005 TRKRPRREAPGNGGHSAGPSWRHIRAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGAL 40 50 60 70 80 90 130 140 150 160 170 pF1KE2 IREDIT---YQQPRLTAWYGE--LPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNS : .. .. :: : ::. : ::.: .:. :.: : :::. ..... ::.::: XP_005 ARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKP-WIPVLERIRDHVSGVTGQTFNF 100 110 120 130 140 150 180 190 200 210 220 230 pF1KE2 LLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGEYTYVERV .: : :.. : . : ::: :. :::.:::: : : .:.: . .. : : XP_005 VLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDS-RGKSPSRRVAVV 160 170 180 190 200 210 240 250 260 270 280 pF1KE2 KIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDPRGAPW ..:: ::.::.:. :.. : : .: . . :::::::: . XP_005 RLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLTKK 220 230 240 250 260 286 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 19:23:24 2016 done: Sat Nov 5 19:23:25 2016 Total Scan time: 7.330 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]