FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8948, 316 aa
  1>>>pF1KB8948 316 - 316 aa - 316 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.8109+/-0.00121; mu= -25.9707+/- 0.073
 mean_var=633.2776+/-131.468, 0's: 0 Z-trim(116.0): 46  B-trim: 159 in 1/53
 Lambda= 0.050966
 statistics sampled from 16512 (16549) to 16512 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.508), width:  16
 Scan time:  2.300

The best scores are:                                      opt bits E(32554)
CCDS7738.1 CDKN1C gene_id:1028|Hs108|chr11         ( 316) 2131 170.7 1.3e-42
CCDS44519.1 CDKN1C gene_id:1028|Hs108|chr11        ( 305) 2069 166.2   3e-41


>>CCDS7738.1 CDKN1C gene_id:1028|Hs108|chr11              (316 aa)
 initn: 2131 init1: 2131 opt: 2131  Z-score: 878.5  bits: 170.7 E(32554): 1.3e-42
Smith-Waterman score: 2131; 100.0% identity (100.0% similar) in 316 aa overlap (1-316:1-316)

               10        20        30        40        50        60
pF1KB8 MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA
              250       260       270       280       290       300

              310      
pF1KB8 APGVGSVEQTPRKRLR
       ::::::::::::::::
CCDS77 APGVGSVEQTPRKRLR
              310      

>>CCDS44519.1 CDKN1C gene_id:1028|Hs108|chr11             (305 aa)
 initn: 2069 init1: 2069 opt: 2069  Z-score: 854.1  bits: 166.2 E(32554): 3e-41
Smith-Waterman score: 2069; 100.0% identity (100.0% similar) in 305 aa overlap (12-316:1-305)

               10        20        30        40        50        60
pF1KB8 MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR
                  :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44            MERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR
                          10        20        30        40         

               70        80        90       100       110       120
pF1KB8 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE
      50        60        70        80        90       100         

              130       140       150       160       170       180
pF1KB8 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP
     110       120       130       140       150       160         

              190       200       210       220       230       240
pF1KB8 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD
     170       180       190       200       210       220         

              250       260       270       280       290       300
pF1KB8 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA
     230       240       250       260       270       280         

              310      
pF1KB8 APGVGSVEQTPRKRLR
       ::::::::::::::::
CCDS44 APGVGSVEQTPRKRLR
     290       300     




316 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 19:36:55 2016 done: Mon Nov  7 19:36:55 2016
 Total Scan time:  2.300 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]