FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5279, 238 aa 1>>>pF1KE5279 238 - 238 aa - 238 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6401+/-0.000869; mu= 9.7989+/- 0.053 mean_var=124.4949+/-25.112, 0's: 0 Z-trim(109.8): 17 B-trim: 277 in 1/54 Lambda= 0.114947 statistics sampled from 11100 (11115) to 11100 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.341), width: 16 Scan time: 2.120 The best scores are: opt bits E(32554) CCDS7565.1 SMNDC1 gene_id:10285|Hs108|chr10 ( 238) 1544 266.6 1e-71 >>CCDS7565.1 SMNDC1 gene_id:10285|Hs108|chr10 (238 aa) initn: 1544 init1: 1544 opt: 1544 Z-score: 1400.8 bits: 266.6 E(32554): 1e-71 Smith-Waterman score: 1544; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238) 10 20 30 40 50 60 pF1KE5 MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLAS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 SDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ 130 140 150 160 170 180 190 200 210 220 230 pF1KE5 FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ 190 200 210 220 230 238 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:21:59 2016 done: Mon Nov 7 23:21:59 2016 Total Scan time: 2.120 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]