FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6379, 327 aa 1>>>pF1KE6379 327 - 327 aa - 327 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9800+/-0.00106; mu= 17.2883+/- 0.064 mean_var=57.0321+/-10.878, 0's: 0 Z-trim(102.1): 25 B-trim: 0 in 0/48 Lambda= 0.169830 statistics sampled from 6784 (6791) to 6784 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.579), E-opt: 0.2 (0.209), width: 16 Scan time: 1.600 The best scores are: opt bits E(32554) CCDS7286.1 VPS26A gene_id:9559|Hs108|chr10 ( 327) 2141 533.1 1.2e-151 CCDS41536.1 VPS26A gene_id:9559|Hs108|chr10 ( 251) 1582 396.1 1.6e-110 CCDS8495.1 VPS26B gene_id:112936|Hs108|chr11 ( 336) 1540 385.8 2.6e-107 >>CCDS7286.1 VPS26A gene_id:9559|Hs108|chr10 (327 aa) initn: 2141 init1: 2141 opt: 2141 Z-score: 2836.2 bits: 533.1 E(32554): 1.2e-151 Smith-Waterman score: 2141; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:1-327) 10 20 30 40 50 60 pF1KE6 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 YIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 YIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 NKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 NKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 VKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 VKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPE 250 260 270 280 290 300 310 320 pF1KE6 KLRKQRTNFHQRFESPESQASAEQPEM ::::::::::::::::::::::::::: CCDS72 KLRKQRTNFHQRFESPESQASAEQPEM 310 320 >>CCDS41536.1 VPS26A gene_id:9559|Hs108|chr10 (251 aa) initn: 1582 init1: 1582 opt: 1582 Z-score: 2097.7 bits: 396.1 E(32554): 1.6e-110 Smith-Waterman score: 1582; 99.2% identity (100.0% similar) in 245 aa overlap (1-245:1-245) 10 20 30 40 50 60 pF1KE6 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 YIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 YIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 NKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 NKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 VKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPE :::.. CCDS41 VKGDNFMEKSS 250 >>CCDS8495.1 VPS26B gene_id:112936|Hs108|chr11 (336 aa) initn: 1527 init1: 1504 opt: 1540 Z-score: 2040.2 bits: 385.8 E(32554): 2.6e-107 Smith-Waterman score: 1540; 69.8% identity (89.3% similar) in 328 aa overlap (1-325:1-326) 10 20 30 40 50 60 pF1KE6 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG :::.: :: :..:.:::.:.:: :: :::::: ::..::::::.:::::.::.:.:. CCDS84 MSFFG--FGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLALKNPN 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES ::::::::.:::.:::::. :..: ::::.:::.:: :::.:::...:::: .::::::: CCDS84 KRLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYES 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE6 YIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEY : : ::.:::::..:: :::.:.:::.:..:: :.:::..:.:::::::::::::::::: CCDS84 YTGQNVKLRYFLRATISRRLNDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEY 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE6 NKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAP ::::::::::::::::::::::::.:::...::.: :: ::.. :..:::::::::::: CCDS84 NKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAP 180 190 200 210 220 230 250 260 270 280 290 pF1KE6 VKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAP- :.:::::::::::::. ::::::.::::::::.:::::.:::.::::::::..::::. CCDS84 VRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVVLWRKGDI 240 250 260 270 280 290 300 310 320 pF1KE6 --EKLRKQRTNFHQRFESPESQASAEQPEM ... .: . ::::. : . .. : CCDS84 VRKSMSHQAAIASQRFEGTTSLGEVRTPSQLSDNNCRQ 300 310 320 330 327 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:44:16 2016 done: Tue Nov 8 12:44:16 2016 Total Scan time: 1.600 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]