FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6552, 128 aa 1>>>pF1KE6552 128 - 128 aa - 128 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1151+/-0.000251; mu= 13.0088+/- 0.016 mean_var=65.9373+/-13.558, 0's: 0 Z-trim(121.9): 3 B-trim: 434 in 1/51 Lambda= 0.157946 statistics sampled from 39168 (39171) to 39168 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.459), width: 16 Scan time: 4.370 The best scores are: opt bits E(85289) NP_002484 (OMIM: 603322) NADH dehydrogenase [ubiqu ( 128) 908 214.2 4.5e-56 NP_877416 (OMIM: 603322) NADH dehydrogenase [ubiqu ( 113) 649 155.2 2.4e-38 NP_001186916 (OMIM: 603322) NADH dehydrogenase [ub ( 97) 442 108.0 3.3e-24 >>NP_002484 (OMIM: 603322) NADH dehydrogenase [ubiquinon (128 aa) initn: 908 init1: 908 opt: 908 Z-score: 1127.7 bits: 214.2 E(85289): 4.5e-56 Smith-Waterman score: 908; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128) 10 20 30 40 50 60 pF1KE6 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVSEKPYGIVEKKSRIFPGDTILETGEVIPPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVSEKPYGIVEKKSRIFPGDTILETGEVIPPM 70 80 90 100 110 120 pF1KE6 KEFPDQHH :::::::: NP_002 KEFPDQHH >>NP_877416 (OMIM: 603322) NADH dehydrogenase [ubiquinon (113 aa) initn: 793 init1: 649 opt: 649 Z-score: 809.5 bits: 155.2 E(85289): 2.4e-38 Smith-Waterman score: 767; 88.3% identity (88.3% similar) in 128 aa overlap (1-128:1-113) 10 20 30 40 50 60 pF1KE6 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_877 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVSEKPYGIVEKKSRIFPGDTILETGEVIPPM ::::::::::::::::::::::::::::::: :::::::::::::: NP_877 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVS---------------GDTILETGEVIPPM 70 80 90 100 pF1KE6 KEFPDQHH :::::::: NP_877 KEFPDQHH 110 >>NP_001186916 (OMIM: 603322) NADH dehydrogenase [ubiqui (97 aa) initn: 678 init1: 433 opt: 442 Z-score: 555.6 bits: 108.0 E(85289): 3.3e-24 Smith-Waterman score: 620; 75.8% identity (75.8% similar) in 128 aa overlap (1-128:1-97) 10 20 30 40 50 60 pF1KE6 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVSEKPYGIVEKKSRIFPGDTILETGEVIPPM ::::::::::::::::::::::::::::: NP_001 -------------------------------EKPYGIVEKKSRIFPGDTILETGEVIPPM 70 80 pF1KE6 KEFPDQHH :::::::: NP_001 KEFPDQHH 90 128 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:21:07 2016 done: Tue Nov 8 14:21:08 2016 Total Scan time: 4.370 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]