FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6552, 128 aa 1>>>pF1KE6552 128 - 128 aa - 128 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3277+/-0.000513; mu= 11.5163+/- 0.031 mean_var=61.6495+/-12.468, 0's: 0 Z-trim(114.7): 6 B-trim: 250 in 1/50 Lambda= 0.163346 statistics sampled from 15291 (15294) to 15291 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.47), width: 16 Scan time: 1.480 The best scores are: opt bits E(32554) CCDS6528.1 NDUFB6 gene_id:4712|Hs108|chr9 ( 128) 908 221.1 1.5e-58 CCDS6529.1 NDUFB6 gene_id:4712|Hs108|chr9 ( 113) 649 160.0 3.1e-40 CCDS75826.1 NDUFB6 gene_id:4712|Hs108|chr9 ( 97) 442 111.2 1.3e-25 >>CCDS6528.1 NDUFB6 gene_id:4712|Hs108|chr9 (128 aa) initn: 908 init1: 908 opt: 908 Z-score: 1164.7 bits: 221.1 E(32554): 1.5e-58 Smith-Waterman score: 908; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128) 10 20 30 40 50 60 pF1KE6 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVSEKPYGIVEKKSRIFPGDTILETGEVIPPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVSEKPYGIVEKKSRIFPGDTILETGEVIPPM 70 80 90 100 110 120 pF1KE6 KEFPDQHH :::::::: CCDS65 KEFPDQHH >>CCDS6529.1 NDUFB6 gene_id:4712|Hs108|chr9 (113 aa) initn: 793 init1: 649 opt: 649 Z-score: 835.7 bits: 160.0 E(32554): 3.1e-40 Smith-Waterman score: 767; 88.3% identity (88.3% similar) in 128 aa overlap (1-128:1-113) 10 20 30 40 50 60 pF1KE6 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVSEKPYGIVEKKSRIFPGDTILETGEVIPPM ::::::::::::::::::::::::::::::: :::::::::::::: CCDS65 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVS---------------GDTILETGEVIPPM 70 80 90 100 pF1KE6 KEFPDQHH :::::::: CCDS65 KEFPDQHH 110 >>CCDS75826.1 NDUFB6 gene_id:4712|Hs108|chr9 (97 aa) initn: 678 init1: 433 opt: 442 Z-score: 573.1 bits: 111.2 E(32554): 1.3e-25 Smith-Waterman score: 620; 75.8% identity (75.8% similar) in 128 aa overlap (1-128:1-97) 10 20 30 40 50 60 pF1KE6 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 MTGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 VHGVYKKSIFVFTHVLVPVWIIHYYMKYHVSEKPYGIVEKKSRIFPGDTILETGEVIPPM ::::::::::::::::::::::::::::: CCDS75 -------------------------------EKPYGIVEKKSRIFPGDTILETGEVIPPM 70 80 pF1KE6 KEFPDQHH :::::::: CCDS75 KEFPDQHH 90 128 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:21:07 2016 done: Tue Nov 8 14:21:07 2016 Total Scan time: 1.480 Total Display time: -0.050 Function used was FASTA [36.3.4 Apr, 2011]