FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1675, 189 aa 1>>>pF1KE1675 189 - 189 aa - 189 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4523+/-0.000399; mu= 12.1249+/- 0.025 mean_var=65.1327+/-13.029, 0's: 0 Z-trim(111.2): 27 B-trim: 515 in 1/51 Lambda= 0.158919 statistics sampled from 19724 (19751) to 19724 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.232), width: 16 Scan time: 5.100 The best scores are: opt bits E(85289) NP_002161 (OMIM: 147568) interferon alpha-8 precur ( 189) 1213 286.8 1.4e-77 NP_002160 (OMIM: 147565) interferon alpha-5 precur ( 189) 1002 238.5 5e-63 NP_002166 (OMIM: 147584) interferon alpha-21 precu ( 189) 996 237.1 1.3e-62 NP_002163 (OMIM: 147579) interferon alpha-14 precu ( 189) 994 236.6 1.8e-62 NP_066546 (OMIM: 147564) interferon alpha-4 precur ( 189) 993 236.4 2.1e-62 NP_002162 (OMIM: 147577) interferon alpha-10 precu ( 189) 991 235.9 2.9e-62 NP_067091 (OMIM: 147583) interferon alpha-17 precu ( 189) 977 232.7 2.7e-61 NP_000596 (OMIM: 147562) interferon alpha-2 precur ( 188) 975 232.3 3.6e-61 NP_002164 (OMIM: 147580) interferon alpha-16 precu ( 189) 973 231.8 5e-61 NP_066282 (OMIM: 147566) interferon alpha-6 precur ( 189) 964 229.8 2.1e-60 NP_066401 (OMIM: 147567) interferon alpha-7 precur ( 189) 951 226.8 1.7e-59 NP_008831 (OMIM: 147578) interferon alpha-1/13 pre ( 190) 922 220.1 1.7e-57 NP_076918 (OMIM: 147660) interferon alpha-1/13 pre ( 189) 917 219.0 3.7e-57 NP_002168 (OMIM: 147553) interferon omega-1 precur ( 195) 717 173.1 2.4e-43 NP_795372 (OMIM: 615223) interferon epsilon precur ( 208) 349 88.8 6.4e-18 NP_002167 (OMIM: 147640) interferon beta precursor ( 187) 291 75.5 5.8e-14 NP_064509 (OMIM: 615326) interferon kappa precurso ( 207) 152 43.6 0.00025 >>NP_002161 (OMIM: 147568) interferon alpha-8 precursor (189 aa) initn: 1213 init1: 1213 opt: 1213 Z-score: 1514.0 bits: 286.8 E(85289): 1.4e-77 Smith-Waterman score: 1213; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 130 140 150 160 170 180 pF1KE1 LQKRLKSKE ::::::::: NP_002 LQKRLKSKE >>NP_002160 (OMIM: 147565) interferon alpha-5 precursor (189 aa) initn: 1002 init1: 1002 opt: 1002 Z-score: 1252.5 bits: 238.5 E(85289): 5e-63 Smith-Waterman score: 1002; 82.0% identity (91.5% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE ::: : ::.:::::. ::. ::::::::::::.:::.:...::: :::::::::::::: NP_002 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE ::::::: .:::::::::::::::::::::::::::::. ::::::.:: :: ::::::: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN .:.:::::: ..::: ::::.:::::::::::::::::: ::::::::::::::::: : NP_002 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 pF1KE1 LQKRLKSKE ::.::. :: NP_002 LQERLRRKE >>NP_002166 (OMIM: 147584) interferon alpha-21 precursor (189 aa) initn: 996 init1: 996 opt: 996 Z-score: 1245.1 bits: 237.1 E(85289): 1.3e-62 Smith-Waterman score: 996; 81.5% identity (92.1% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE :::.: ::.:..::::::. :::::::::::::::::::::::: :::::::::::::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE ::::::: .:::::::::::::::::::::::::::::. ...::..: ::.::::::: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN .::.::::: :.::: ::::::.:::::::::::::::: ::::::::::::::::: NP_002 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 130 140 150 160 170 180 pF1KE1 LQKRLKSKE .:.::. :: NP_002 FQERLRRKE >>NP_002163 (OMIM: 147579) interferon alpha-14 precursor (189 aa) initn: 1011 init1: 994 opt: 994 Z-score: 1242.6 bits: 236.6 E(85289): 1.8e-62 Smith-Waterman score: 994; 81.0% identity (92.1% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE ::: : :..:::::: :: ::::.: :::::.:::.:.:.::::::::::::::::::: NP_002 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE ::::::: .::::::::::::::.::::::::::.:::: :::::..::::: ::.:::: NP_002 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN .::.::::: :.::: :::::::.:::::::::: ::::: :::::::::::::.:.: : NP_002 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLKSKE :::::. :. NP_002 LQKRLRRKD >>NP_066546 (OMIM: 147564) interferon alpha-4 precursor (189 aa) initn: 1014 init1: 993 opt: 993 Z-score: 1241.4 bits: 236.4 E(85289): 2.1e-62 Smith-Waterman score: 993; 81.5% identity (92.1% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE :::.: ::.:..::::::. :::::::::::::::::::::::: ::: :::::::::: NP_066 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE ::.:::: .::::::::::::::::::::::::.::::: ...::..: :: ::::::: NP_066 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN .::.::::: :.::: :::::::::::::::::::::::: :::::::::::::.:.: : NP_066 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLKSKE :::::. :. NP_066 LQKRLRRKD >>NP_002162 (OMIM: 147577) interferon alpha-10 precursor (189 aa) initn: 1012 init1: 991 opt: 991 Z-score: 1238.9 bits: 235.9 E(85289): 2.9e-62 Smith-Waterman score: 991; 80.4% identity (92.6% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE :::.: ::.:..::::::. :::::::::::::::::::::.:: ::::::::::::::. NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE .:::::: .::::::::::::::::::::::::.::::: ...::..: :: ::::::: NP_002 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN .::.::::: :.::: :::::::::::::::::: :.::: :::::::::::::.:.: : NP_002 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLKSKE :::::. :. NP_002 LQKRLRRKD >>NP_067091 (OMIM: 147583) interferon alpha-17 precursor (189 aa) initn: 1014 init1: 977 opt: 977 Z-score: 1221.6 bits: 232.7 E(85289): 2.7e-61 Smith-Waterman score: 977; 79.9% identity (92.1% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE :::.: ::.:..::::::. :::::::::::::::::::::::: :::::::::::::: NP_067 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE .:::::: .::::.:::::::::::::::::::.::::: ...::..: :: ::::.:: NP_067 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN .::.::::. :.::: :::::::::::::::::::::::: :::::::::::::.:.: : NP_067 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLKSKE ::: :. :. NP_067 LQKILRRKD >>NP_000596 (OMIM: 147562) interferon alpha-2 precursor (188 aa) initn: 975 init1: 632 opt: 975 Z-score: 1219.1 bits: 232.3 E(85289): 3.6e-61 Smith-Waterman score: 975; 82.0% identity (89.4% similar) in 189 aa overlap (1-189:1-188) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE ::::: :::::.::: :: :.:::::::::::.::.:.::::::::: :::::::::: NP_000 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE :::::: . :::::..: :::::::: :::::::::::: ::::::.:: :: ::::::: NP_000 FPQEEFGN-QFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN .::.: ::: :.::: :::::::::::::::::: ::::: ::::::::::::::::: : NP_000 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 120 130 140 150 160 170 pF1KE1 LQKRLKSKE ::. :.::: NP_000 LQESLRSKE 180 >>NP_002164 (OMIM: 147580) interferon alpha-16 precursor (189 aa) initn: 990 init1: 973 opt: 973 Z-score: 1216.6 bits: 231.8 E(85289): 5e-61 Smith-Waterman score: 973; 82.0% identity (89.4% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE :::.: ::.:..::::::. :::::::::::::::::::::::: ::: :::::::.:: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE :::: :: .:::::::::..::::::::::::::::::: ::::::.::::: ::::::: NP_002 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN .:: ::::: : :: :::::::::::::::::: :::: :::::::::::::::.: : NP_002 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLKSKE ::: :. :. NP_002 LQKGLRRKD >>NP_066282 (OMIM: 147566) interferon alpha-6 precursor (189 aa) initn: 964 init1: 964 opt: 964 Z-score: 1205.4 bits: 229.8 E(85289): 2.1e-60 Smith-Waterman score: 964; 81.0% identity (89.4% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE ::: : ::.:::::: :: :: ::::::::::.::...::::::::: ::::::::::. NP_066 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE ::::::: .:::::.:::::::.::::::::::::::.: :: :::..: :: ::::::: NP_066 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN .:::::: : .::: :::::::::::::::::::::::: ::::::::::::::: : : NP_066 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 130 140 150 160 170 180 pF1KE1 LQKRLKSKE ::.::. :: NP_066 LQERLRRKE 189 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:35:10 2016 done: Sun Nov 6 05:35:11 2016 Total Scan time: 5.100 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]