Result of FASTA (omim) for pFN21AE1675
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1675, 189 aa
  1>>>pF1KE1675 189 - 189 aa - 189 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4523+/-0.000399; mu= 12.1249+/- 0.025
 mean_var=65.1327+/-13.029, 0's: 0 Z-trim(111.2): 27  B-trim: 515 in 1/51
 Lambda= 0.158919
 statistics sampled from 19724 (19751) to 19724 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.232), width:  16
 Scan time:  5.100

The best scores are:                                      opt bits E(85289)
NP_002161 (OMIM: 147568) interferon alpha-8 precur ( 189) 1213 286.8 1.4e-77
NP_002160 (OMIM: 147565) interferon alpha-5 precur ( 189) 1002 238.5   5e-63
NP_002166 (OMIM: 147584) interferon alpha-21 precu ( 189)  996 237.1 1.3e-62
NP_002163 (OMIM: 147579) interferon alpha-14 precu ( 189)  994 236.6 1.8e-62
NP_066546 (OMIM: 147564) interferon alpha-4 precur ( 189)  993 236.4 2.1e-62
NP_002162 (OMIM: 147577) interferon alpha-10 precu ( 189)  991 235.9 2.9e-62
NP_067091 (OMIM: 147583) interferon alpha-17 precu ( 189)  977 232.7 2.7e-61
NP_000596 (OMIM: 147562) interferon alpha-2 precur ( 188)  975 232.3 3.6e-61
NP_002164 (OMIM: 147580) interferon alpha-16 precu ( 189)  973 231.8   5e-61
NP_066282 (OMIM: 147566) interferon alpha-6 precur ( 189)  964 229.8 2.1e-60
NP_066401 (OMIM: 147567) interferon alpha-7 precur ( 189)  951 226.8 1.7e-59
NP_008831 (OMIM: 147578) interferon alpha-1/13 pre ( 190)  922 220.1 1.7e-57
NP_076918 (OMIM: 147660) interferon alpha-1/13 pre ( 189)  917 219.0 3.7e-57
NP_002168 (OMIM: 147553) interferon omega-1 precur ( 195)  717 173.1 2.4e-43
NP_795372 (OMIM: 615223) interferon epsilon precur ( 208)  349 88.8 6.4e-18
NP_002167 (OMIM: 147640) interferon beta precursor ( 187)  291 75.5 5.8e-14
NP_064509 (OMIM: 615326) interferon kappa precurso ( 207)  152 43.6 0.00025


>>NP_002161 (OMIM: 147568) interferon alpha-8 precursor   (189 aa)
 initn: 1213 init1: 1213 opt: 1213  Z-score: 1514.0  bits: 286.8 E(85289): 1.4e-77
Smith-Waterman score: 1213; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
              130       140       150       160       170       180

                
pF1KE1 LQKRLKSKE
       :::::::::
NP_002 LQKRLKSKE
                

>>NP_002160 (OMIM: 147565) interferon alpha-5 precursor   (189 aa)
 initn: 1002 init1: 1002 opt: 1002  Z-score: 1252.5  bits: 238.5 E(85289): 5e-63
Smith-Waterman score: 1002; 82.0% identity (91.5% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
       ::: : ::.:::::. ::. ::::::::::::.:::.:...::: :::::::::::::: 
NP_002 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
       ::::::: .:::::::::::::::::::::::::::::. ::::::.:: :: :::::::
NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
       .:.:::::: ..:::  ::::.:::::::::::::::::: ::::::::::::::::: :
NP_002 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
              130       140       150       160       170       180

                
pF1KE1 LQKRLKSKE
       ::.::. ::
NP_002 LQERLRRKE
                

>>NP_002166 (OMIM: 147584) interferon alpha-21 precursor  (189 aa)
 initn: 996 init1: 996 opt: 996  Z-score: 1245.1  bits: 237.1 E(85289): 1.3e-62
Smith-Waterman score: 996; 81.5% identity (92.1% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
       :::.: ::.:..::::::. :::::::::::::::::::::::: :::::::::::::: 
NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
       ::::::: .:::::::::::::::::::::::::::::. ...::..:  ::.:::::::
NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
       .::.::::: :.:::  ::::::.:::::::::::::::: :::::::::::::::::  
NP_002 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
              130       140       150       160       170       180

                
pF1KE1 LQKRLKSKE
       .:.::. ::
NP_002 FQERLRRKE
                

>>NP_002163 (OMIM: 147579) interferon alpha-14 precursor  (189 aa)
 initn: 1011 init1: 994 opt: 994  Z-score: 1242.6  bits: 236.6 E(85289): 1.8e-62
Smith-Waterman score: 994; 81.0% identity (92.1% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
       ::: : :..:::::: ::  ::::.: :::::.:::.:.:.:::::::::::::::::::
NP_002 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
       ::::::: .::::::::::::::.::::::::::.:::: :::::..::::: ::.::::
NP_002 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
       .::.::::: :.::: :::::::.:::::::::: ::::: :::::::::::::.:.: :
NP_002 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KE1 LQKRLKSKE
       :::::. :.
NP_002 LQKRLRRKD
                

>>NP_066546 (OMIM: 147564) interferon alpha-4 precursor   (189 aa)
 initn: 1014 init1: 993 opt: 993  Z-score: 1241.4  bits: 236.4 E(85289): 2.1e-62
Smith-Waterman score: 993; 81.5% identity (92.1% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
       :::.: ::.:..::::::. :::::::::::::::::::::::: ::: :::::::::: 
NP_066 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
       ::.:::: .::::::::::::::::::::::::.::::: ...::..:  :: :::::::
NP_066 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
       .::.::::: :.::: :::::::::::::::::::::::: :::::::::::::.:.: :
NP_066 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KE1 LQKRLKSKE
       :::::. :.
NP_066 LQKRLRRKD
                

>>NP_002162 (OMIM: 147577) interferon alpha-10 precursor  (189 aa)
 initn: 1012 init1: 991 opt: 991  Z-score: 1238.9  bits: 235.9 E(85289): 2.9e-62
Smith-Waterman score: 991; 80.4% identity (92.6% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
       :::.: ::.:..::::::. :::::::::::::::::::::.:: ::::::::::::::.
NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
       .:::::: .::::::::::::::::::::::::.::::: ...::..:  :: :::::::
NP_002 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
       .::.::::: :.::: :::::::::::::::::: :.::: :::::::::::::.:.: :
NP_002 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KE1 LQKRLKSKE
       :::::. :.
NP_002 LQKRLRRKD
                

>>NP_067091 (OMIM: 147583) interferon alpha-17 precursor  (189 aa)
 initn: 1014 init1: 977 opt: 977  Z-score: 1221.6  bits: 232.7 E(85289): 2.7e-61
Smith-Waterman score: 977; 79.9% identity (92.1% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
       :::.: ::.:..::::::. :::::::::::::::::::::::: :::::::::::::: 
NP_067 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
       .:::::: .::::.:::::::::::::::::::.::::: ...::..:  :: ::::.::
NP_067 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
       .::.::::. :.::: :::::::::::::::::::::::: :::::::::::::.:.: :
NP_067 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KE1 LQKRLKSKE
       ::: :. :.
NP_067 LQKILRRKD
                

>>NP_000596 (OMIM: 147562) interferon alpha-2 precursor   (188 aa)
 initn: 975 init1: 632 opt: 975  Z-score: 1219.1  bits: 232.3 E(85289): 3.6e-61
Smith-Waterman score: 975; 82.0% identity (89.4% similar) in 189 aa overlap (1-189:1-188)

               10        20        30        40        50        60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
       ::::: :::::.::: ::  :.:::::::::::.::.:.::::::::: :::::::::: 
NP_000 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
       :::::: . :::::..: :::::::: :::::::::::: ::::::.:: :: :::::::
NP_000 FPQEEFGN-QFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
                70        80        90       100       110         

              130       140       150       160       170       180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
       .::.: ::: :.::: :::::::::::::::::: ::::: ::::::::::::::::: :
NP_000 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
     120       130       140       150       160       170         

                
pF1KE1 LQKRLKSKE
       ::. :.:::
NP_000 LQESLRSKE
     180        

>>NP_002164 (OMIM: 147580) interferon alpha-16 precursor  (189 aa)
 initn: 990 init1: 973 opt: 973  Z-score: 1216.6  bits: 231.8 E(85289): 5e-61
Smith-Waterman score: 973; 82.0% identity (89.4% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
       :::.: ::.:..::::::. :::::::::::::::::::::::: ::: :::::::.:: 
NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
       :::: :: .:::::::::..::::::::::::::::::: ::::::.::::: :::::::
NP_002 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
       .:: ::::: :  :: ::::::::::::::::::  :::: :::::::::::::::.: :
NP_002 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
              130       140       150       160       170       180

                
pF1KE1 LQKRLKSKE
       ::: :. :.
NP_002 LQKGLRRKD
                

>>NP_066282 (OMIM: 147566) interferon alpha-6 precursor   (189 aa)
 initn: 964 init1: 964 opt: 964  Z-score: 1205.4  bits: 229.8 E(85289): 2.1e-60
Smith-Waterman score: 964; 81.0% identity (89.4% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
       ::: : ::.:::::: ::  :: ::::::::::.::...::::::::: ::::::::::.
NP_066 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
       ::::::: .:::::.:::::::.::::::::::::::.: :: :::..: :: :::::::
NP_066 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
       .:::::: :  .::: :::::::::::::::::::::::: ::::::::::::::: : :
NP_066 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
              130       140       150       160       170       180

                
pF1KE1 LQKRLKSKE
       ::.::. ::
NP_066 LQERLRRKE
                




189 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:35:10 2016 done: Sun Nov  6 05:35:11 2016
 Total Scan time:  5.100 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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