FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1670, 188 aa 1>>>pF1KE1670 188 - 188 aa - 188 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9714+/-0.000351; mu= 14.7037+/- 0.022 mean_var=58.0830+/-11.543, 0's: 0 Z-trim(112.7): 22 B-trim: 487 in 1/52 Lambda= 0.168287 statistics sampled from 21656 (21676) to 21656 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.254), width: 16 Scan time: 4.940 The best scores are: opt bits E(85289) NP_000596 (OMIM: 147562) interferon alpha-2 precur ( 188) 1227 305.9 2.4e-83 NP_066282 (OMIM: 147566) interferon alpha-6 precur ( 189) 1043 261.3 6.9e-70 NP_002160 (OMIM: 147565) interferon alpha-5 precur ( 189) 1041 260.8 9.6e-70 NP_002163 (OMIM: 147579) interferon alpha-14 precu ( 189) 1024 256.6 1.7e-68 NP_066546 (OMIM: 147564) interferon alpha-4 precur ( 189) 1007 252.5 2.9e-67 NP_008831 (OMIM: 147578) interferon alpha-1/13 pre ( 190) 999 250.6 1.1e-66 NP_076918 (OMIM: 147660) interferon alpha-1/13 pre ( 189) 994 249.4 2.6e-66 NP_002166 (OMIM: 147584) interferon alpha-21 precu ( 189) 994 249.4 2.6e-66 NP_067091 (OMIM: 147583) interferon alpha-17 precu ( 189) 993 249.1 3.1e-66 NP_002164 (OMIM: 147580) interferon alpha-16 precu ( 189) 991 248.6 4.3e-66 NP_002162 (OMIM: 147577) interferon alpha-10 precu ( 189) 988 247.9 7.2e-66 NP_002161 (OMIM: 147568) interferon alpha-8 precur ( 189) 975 244.7 6.4e-65 NP_066401 (OMIM: 147567) interferon alpha-7 precur ( 189) 954 239.6 2.2e-63 NP_002168 (OMIM: 147553) interferon omega-1 precur ( 195) 715 181.6 6.6e-46 NP_795372 (OMIM: 615223) interferon epsilon precur ( 208) 345 91.8 7.7e-19 NP_002167 (OMIM: 147640) interferon beta precursor ( 187) 324 86.7 2.4e-17 NP_064509 (OMIM: 615326) interferon kappa precurso ( 207) 158 46.4 3.5e-05 >>NP_000596 (OMIM: 147562) interferon alpha-2 precursor (188 aa) initn: 1227 init1: 1227 opt: 1227 Z-score: 1617.2 bits: 305.9 E(85289): 2.4e-83 Smith-Waterman score: 1227; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 FPQEEFGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 CVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 CVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNL 130 140 150 160 170 180 pF1KE1 QESLRSKE :::::::: NP_000 QESLRSKE >>NP_066282 (OMIM: 147566) interferon alpha-6 precursor (189 aa) initn: 1041 init1: 660 opt: 1043 Z-score: 1375.7 bits: 261.3 E(85289): 6.9e-70 Smith-Waterman score: 1043; 85.7% identity (91.0% similar) in 189 aa overlap (1-188:1-189) 10 20 30 40 50 60 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG ::: ::::.::.:::::::::. :::::::::: :::.::::::::::::::::::::: NP_066 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE :::::: ::::::::.: ::::.::: ::::::::::.:::: ::::.:::::::::::: NP_066 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN :::.: : : ::::.:::::::::::::::::: ::::::::::::::::::::: : : NP_066 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 130 140 150 160 170 180 180 pF1KE1 LQESLRSKE ::: :: :: NP_066 LQERLRRKE >>NP_002160 (OMIM: 147565) interferon alpha-5 precursor (189 aa) initn: 1039 init1: 683 opt: 1041 Z-score: 1373.1 bits: 260.8 E(85289): 9.6e-70 Smith-Waterman score: 1041; 83.6% identity (93.1% similar) in 189 aa overlap (1-188:1-189) 10 20 30 40 50 60 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG ::: :.::.::.::.::: ::.::::::::::..:::::..::: ::: ::::::::::: NP_002 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE :::::: :::::::..: :::::::: :::::::::::.::::::::::::::::::::: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN ::..: ::: .::::. ::::.:::::::::::: :::::::::::::::::::::::.: NP_002 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 180 pF1KE1 LQESLRSKE ::: :: :: NP_002 LQERLRRKE >>NP_002163 (OMIM: 147579) interferon alpha-14 precursor (189 aa) initn: 1022 init1: 666 opt: 1024 Z-score: 1350.8 bits: 256.6 E(85289): 1.7e-68 Smith-Waterman score: 1024; 82.0% identity (93.1% similar) in 189 aa overlap (1-188:1-189) 10 20 30 40 50 60 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG ::: :::..::.:::::::::.::.: :::::..::::::.::::::: :::::::::: NP_002 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE :::::: :::::::..: :::::.:: :::::::.::::::::::.::: ::.::.:::: NP_002 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN ::::: ::: :::::.:::::::.:::::::::: :::::::::::::::::::.:.::: NP_002 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 180 pF1KE1 LQESLRSKE ::. :: :. NP_002 LQKRLRRKD >>NP_066546 (OMIM: 147564) interferon alpha-4 precursor (189 aa) initn: 1011 init1: 649 opt: 1007 Z-score: 1328.5 bits: 252.5 E(85289): 2.9e-67 Smith-Waterman score: 1007; 81.5% identity (93.1% similar) in 189 aa overlap (1-188:1-189) 10 20 30 40 50 60 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG :::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: ::::::::::: NP_066 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE ::.::: :.:::::..: :::::::: ::::::.::::::...::.:: ::::::::::: NP_066 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN ::::: ::: :::::.:::::::::::::::::: :::::::::::::::::::.:.::: NP_066 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 180 pF1KE1 LQESLRSKE ::. :: :. NP_066 LQKRLRRKD >>NP_008831 (OMIM: 147578) interferon alpha-1/13 precurs (190 aa) initn: 997 init1: 650 opt: 999 Z-score: 1318.0 bits: 250.6 E(85289): 1.1e-66 Smith-Waterman score: 999; 82.5% identity (89.4% similar) in 189 aa overlap (1-188:2-190) 10 20 30 40 50 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDF :: ::::.::.:::::::::.:::::.:::: .:::::::::: ::: ::: ::::: NP_008 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 GFPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDL ::::::: ::::::: .: ::::.::::::::.:::::::::: ::::: :::::::::: NP_008 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 EACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLST ::::.: : :::::. ::::::.:::.:::::: :::::::::::::::::::.:::: NP_008 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST 130 140 150 160 170 180 180 pF1KE1 NLQESLRSKE :::: :: :: NP_008 NLQERLRRKE 190 >>NP_076918 (OMIM: 147660) interferon alpha-1/13 precurs (189 aa) initn: 992 init1: 650 opt: 994 Z-score: 1311.4 bits: 249.4 E(85289): 2.6e-66 Smith-Waterman score: 994; 82.0% identity (89.4% similar) in 189 aa overlap (1-188:1-189) 10 20 30 40 50 60 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG :: ::::..:.:::::::::.:::::.:::: .:::::::::: ::: ::: :::::: NP_076 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE :::::: ::::::: .: ::::.::::::::.:::::::::: ::::: ::::::::::: NP_076 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN :::.: : :::::. ::::::.:::.:::::: :::::::::::::::::::.::::: NP_076 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 130 140 150 160 170 180 180 pF1KE1 LQESLRSKE ::: :: :: NP_076 LQERLRRKE >>NP_002166 (OMIM: 147584) interferon alpha-21 precursor (189 aa) initn: 992 init1: 641 opt: 994 Z-score: 1311.4 bits: 249.4 E(85289): 2.6e-66 Smith-Waterman score: 994; 81.5% identity (91.0% similar) in 189 aa overlap (1-188:1-189) 10 20 30 40 50 60 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG :::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: ::::::::::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE :::::: :::::::..: :::::::: :::::::::::.:...::.:: ::: ::::::: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN ::::: ::: :::::. ::::::.:::::::::: ::::::::::::::::::::::: NP_002 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 130 140 150 160 170 180 180 pF1KE1 LQESLRSKE .:: :: :: NP_002 FQERLRRKE >>NP_067091 (OMIM: 147583) interferon alpha-17 precursor (189 aa) initn: 1006 init1: 647 opt: 993 Z-score: 1310.1 bits: 249.1 E(85289): 3.1e-66 Smith-Waterman score: 993; 80.4% identity (93.1% similar) in 189 aa overlap (1-188:1-189) 10 20 30 40 50 60 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG :::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: ::::::::::: NP_067 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE .::::: ::::::...: :::::::: ::::::.::::::...::.:: ::::::::.:: NP_067 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN ::::: ::. :::::.:::::::::::::::::: :::::::::::::::::::.:.::: NP_067 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 180 pF1KE1 LQESLRSKE ::. :: :. NP_067 LQKILRRKD >>NP_002164 (OMIM: 147580) interferon alpha-16 precursor (189 aa) initn: 989 init1: 654 opt: 991 Z-score: 1307.5 bits: 248.6 E(85289): 4.3e-66 Smith-Waterman score: 991; 81.0% identity (91.0% similar) in 189 aa overlap (1-188:1-189) 10 20 30 40 50 60 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG :::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: :::::::.::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE :::: : :::::::..: ..:::::: :::::::::::::::::::::: ::.::::::: NP_002 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN ::: : ::: : ::.:::::::::::::::::: ::::::::::::::::::::.::: NP_002 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 180 pF1KE1 LQESLRSKE ::..:: :. NP_002 LQKGLRRKD 188 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:48:47 2016 done: Sun Nov 6 15:48:48 2016 Total Scan time: 4.940 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]