FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1670, 188 aa 1>>>pF1KE1670 188 - 188 aa - 188 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0241+/-0.000843; mu= 14.4375+/- 0.050 mean_var=59.8747+/-11.989, 0's: 0 Z-trim(106.0): 21 B-trim: 184 in 2/50 Lambda= 0.165750 statistics sampled from 8731 (8749) to 8731 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.269), width: 16 Scan time: 1.810 The best scores are: opt bits E(32554) CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 1227 301.5 2e-82 CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 1043 257.5 3.5e-69 CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1041 257.0 4.9e-69 CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1024 253.0 8.2e-68 CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 1007 248.9 1.4e-66 CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 999 247.0 5.2e-66 CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 994 245.8 1.2e-65 CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 994 245.8 1.2e-65 CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 993 245.5 1.4e-65 CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 991 245.1 1.9e-65 CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 988 244.4 3.2e-65 CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 975 241.2 2.8e-64 CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 954 236.2 9e-63 CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 715 179.1 1.5e-45 CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 345 90.6 6.7e-19 CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 324 85.6 2e-17 >>CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 (188 aa) initn: 1227 init1: 1227 opt: 1227 Z-score: 1593.3 bits: 301.5 E(32554): 2e-82 Smith-Waterman score: 1227; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 FPQEEFGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 CVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 CVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNL 130 140 150 160 170 180 pF1KE1 QESLRSKE :::::::: CCDS65 QESLRSKE >>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa) initn: 1041 init1: 660 opt: 1043 Z-score: 1355.5 bits: 257.5 E(32554): 3.5e-69 Smith-Waterman score: 1043; 85.7% identity (91.0% similar) in 189 aa overlap (1-188:1-189) 10 20 30 40 50 60 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG ::: ::::.::.:::::::::. :::::::::: :::.::::::::::::::::::::: CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE :::::: ::::::::.: ::::.::: ::::::::::.:::: ::::.:::::::::::: CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN :::.: : : ::::.:::::::::::::::::: ::::::::::::::::::::: : : CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 130 140 150 160 170 180 180 pF1KE1 LQESLRSKE ::: :: :: CCDS65 LQERLRRKE >>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa) initn: 1039 init1: 683 opt: 1041 Z-score: 1352.9 bits: 257.0 E(32554): 4.9e-69 Smith-Waterman score: 1041; 83.6% identity (93.1% similar) in 189 aa overlap (1-188:1-189) 10 20 30 40 50 60 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG ::: :.::.::.::.::: ::.::::::::::..:::::..::: ::: ::::::::::: CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE :::::: :::::::..: :::::::: :::::::::::.::::::::::::::::::::: CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN ::..: ::: .::::. ::::.:::::::::::: :::::::::::::::::::::::.: CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 180 pF1KE1 LQESLRSKE ::: :: :: CCDS65 LQERLRRKE >>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa) initn: 1022 init1: 666 opt: 1024 Z-score: 1330.9 bits: 253.0 E(32554): 8.2e-68 Smith-Waterman score: 1024; 82.0% identity (93.1% similar) in 189 aa overlap (1-188:1-189) 10 20 30 40 50 60 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG ::: :::..::.:::::::::.::.: :::::..::::::.::::::: :::::::::: CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE :::::: :::::::..: :::::.:: :::::::.::::::::::.::: ::.::.:::: CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN ::::: ::: :::::.:::::::.:::::::::: :::::::::::::::::::.:.::: CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 180 pF1KE1 LQESLRSKE ::. :: :. CCDS65 LQKRLRRKD >>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa) initn: 1011 init1: 649 opt: 1007 Z-score: 1308.9 bits: 248.9 E(32554): 1.4e-66 Smith-Waterman score: 1007; 81.5% identity (93.1% similar) in 189 aa overlap (1-188:1-189) 10 20 30 40 50 60 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG :::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: ::::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE ::.::: :.:::::..: :::::::: ::::::.::::::...::.:: ::::::::::: CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN ::::: ::: :::::.:::::::::::::::::: :::::::::::::::::::.:.::: CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 180 pF1KE1 LQESLRSKE ::. :: :. CCDS64 LQKRLRRKD >>CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 (190 aa) initn: 997 init1: 650 opt: 999 Z-score: 1298.6 bits: 247.0 E(32554): 5.2e-66 Smith-Waterman score: 999; 82.5% identity (89.4% similar) in 189 aa overlap (1-188:2-190) 10 20 30 40 50 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDF :: ::::.::.:::::::::.:::::.:::: .:::::::::: ::: ::: ::::: CCDS65 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 GFPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDL ::::::: ::::::: .: ::::.::::::::.:::::::::: ::::: :::::::::: CCDS65 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 EACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLST ::::.: : :::::. ::::::.:::.:::::: :::::::::::::::::::.:::: CCDS65 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST 130 140 150 160 170 180 180 pF1KE1 NLQESLRSKE :::: :: :: CCDS65 NLQERLRRKE 190 >>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa) initn: 992 init1: 641 opt: 994 Z-score: 1292.1 bits: 245.8 E(32554): 1.2e-65 Smith-Waterman score: 994; 81.5% identity (91.0% similar) in 189 aa overlap (1-188:1-189) 10 20 30 40 50 60 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG :::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: ::::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE :::::: :::::::..: :::::::: :::::::::::.:...::.:: ::: ::::::: CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN ::::: ::: :::::. ::::::.:::::::::: ::::::::::::::::::::::: CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 130 140 150 160 170 180 180 pF1KE1 LQESLRSKE .:: :: :: CCDS64 FQERLRRKE >>CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 (189 aa) initn: 992 init1: 650 opt: 994 Z-score: 1292.1 bits: 245.8 E(32554): 1.2e-65 Smith-Waterman score: 994; 82.0% identity (89.4% similar) in 189 aa overlap (1-188:1-189) 10 20 30 40 50 60 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG :: ::::..:.:::::::::.:::::.:::: .:::::::::: ::: ::: :::::: CCDS65 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE :::::: ::::::: .: ::::.::::::::.:::::::::: ::::: ::::::::::: CCDS65 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN :::.: : :::::. ::::::.:::.:::::: :::::::::::::::::::.::::: CCDS65 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 130 140 150 160 170 180 180 pF1KE1 LQESLRSKE ::: :: :: CCDS65 LQERLRRKE >>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa) initn: 1006 init1: 647 opt: 993 Z-score: 1290.9 bits: 245.5 E(32554): 1.4e-65 Smith-Waterman score: 993; 80.4% identity (93.1% similar) in 189 aa overlap (1-188:1-189) 10 20 30 40 50 60 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG :::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: ::::::::::: CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE .::::: ::::::...: :::::::: ::::::.::::::...::.:: ::::::::.:: CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN ::::: ::. :::::.:::::::::::::::::: :::::::::::::::::::.:.::: CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 180 pF1KE1 LQESLRSKE ::. :: :. CCDS65 LQKILRRKD >>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 (189 aa) initn: 989 init1: 654 opt: 991 Z-score: 1288.3 bits: 245.1 E(32554): 1.9e-65 Smith-Waterman score: 991; 81.0% identity (91.0% similar) in 189 aa overlap (1-188:1-189) 10 20 30 40 50 60 pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG :::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: :::::::.::: CCDS34 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE :::: : :::::::..: ..:::::: :::::::::::::::::::::: ::.::::::: CCDS34 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN ::: : ::: : ::.:::::::::::::::::: ::::::::::::::::::::.::: CCDS34 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 180 pF1KE1 LQESLRSKE ::..:: :. CCDS34 LQKGLRRKD 188 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:48:47 2016 done: Sun Nov 6 15:48:47 2016 Total Scan time: 1.810 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]