Result of FASTA (omim) for pFN21AE1672
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1672, 189 aa
  1>>>pF1KE1672 189 - 189 aa - 189 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9868+/-0.000367; mu= 14.5991+/- 0.023
 mean_var=60.1565+/-11.900, 0's: 0 Z-trim(113.3): 35  B-trim: 96 in 1/51
 Lambda= 0.165361
 statistics sampled from 22586 (22613) to 22586 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.265), width:  16
 Scan time:  5.590

The best scores are:                                      opt bits E(85289)
NP_066282 (OMIM: 147566) interferon alpha-6 precur ( 189) 1258 308.3 4.8e-84
NP_002160 (OMIM: 147565) interferon alpha-5 precur ( 189) 1074 264.4 7.9e-71
NP_002163 (OMIM: 147579) interferon alpha-14 precu ( 189) 1052 259.1   3e-69
NP_000596 (OMIM: 147562) interferon alpha-2 precur ( 188) 1043 257.0 1.3e-68
NP_008831 (OMIM: 147578) interferon alpha-1/13 pre ( 190) 1042 256.7 1.6e-68
NP_076918 (OMIM: 147660) interferon alpha-1/13 pre ( 189) 1037 255.5 3.6e-68
NP_066546 (OMIM: 147564) interferon alpha-4 precur ( 189) 1007 248.4 5.1e-66
NP_002162 (OMIM: 147577) interferon alpha-10 precu ( 189) 1005 247.9 7.2e-66
NP_002166 (OMIM: 147584) interferon alpha-21 precu ( 189) 1000 246.7 1.6e-65
NP_067091 (OMIM: 147583) interferon alpha-17 precu ( 189)  984 242.9 2.3e-64
NP_002164 (OMIM: 147580) interferon alpha-16 precu ( 189)  975 240.8   1e-63
NP_002161 (OMIM: 147568) interferon alpha-8 precur ( 189)  964 238.1 6.3e-63
NP_066401 (OMIM: 147567) interferon alpha-7 precur ( 189)  959 236.9 1.4e-62
NP_002168 (OMIM: 147553) interferon omega-1 precur ( 195)  683 171.1 9.8e-43
NP_795372 (OMIM: 615223) interferon epsilon precur ( 208)  345 90.5 1.9e-18
NP_002167 (OMIM: 147640) interferon beta precursor ( 187)  308 81.6 8.1e-16
NP_064509 (OMIM: 615326) interferon kappa precurso ( 207)  159 46.1 4.4e-05


>>NP_066282 (OMIM: 147566) interferon alpha-6 precursor   (189 aa)
 initn: 1258 init1: 1258 opt: 1258  Z-score: 1629.8  bits: 308.3 E(85289): 4.8e-84
Smith-Waterman score: 1258; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
              130       140       150       160       170       180

                
pF1KE1 LQERLRRKE
       :::::::::
NP_066 LQERLRRKE
                

>>NP_002160 (OMIM: 147565) interferon alpha-5 precursor   (189 aa)
 initn: 1074 init1: 1074 opt: 1074  Z-score: 1392.5  bits: 264.4 E(85289): 7.9e-71
Smith-Waterman score: 1074; 86.2% identity (93.7% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
       :::::.::::::::.::: ::: :::::::::..:::.:..::: ::: :::::::::: 
NP_002 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
       ::::::::::::::.:::::::.::::::::::::::..::: ::::.::::::::::::
NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
       ::.:::: :  ::::: ::::.:::::::::::::::::::::::::::::::::: : :
NP_002 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
              130       140       150       160       170       180

                
pF1KE1 LQERLRRKE
       :::::::::
NP_002 LQERLRRKE
                

>>NP_002163 (OMIM: 147579) interferon alpha-14 precursor  (189 aa)
 initn: 1104 init1: 1052 opt: 1052  Z-score: 1364.2  bits: 259.1 E(85289): 3e-69
Smith-Waterman score: 1052; 83.1% identity (94.2% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
       :::::::.:::::::::::::: :.: :::::..:::.::.::::::: ::::::::::.
NP_002 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
       ::::::::::::::.:::::::..::::::::::.::.:::: ::.:.: ::.::.::::
NP_002 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
       :::.::: :  ::::::::::::.:::::::::: :::::::::::::::::::.: : :
NP_002 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KE1 LQERLRRKE
       ::.:::::.
NP_002 LQKRLRRKD
                

>>NP_000596 (OMIM: 147562) interferon alpha-2 precursor   (188 aa)
 initn: 1041 init1: 660 opt: 1043  Z-score: 1352.6  bits: 257.0 E(85289): 1.3e-68
Smith-Waterman score: 1043; 85.7% identity (91.0% similar) in 189 aa overlap (1-189:1-188)

               10        20        30        40        50        60
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
       ::: ::::.::.:::::::::. :::::::::: :::.::::::::::::::::::::: 
NP_000 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
       :::::: ::::::::.: ::::.::: ::::::::::.:::: ::::.::::::::::::
NP_000 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
                70        80        90       100       110         

              130       140       150       160       170       180
pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
       :::.: : :  ::::.:::::::::::::::::: ::::::::::::::::::::: : :
NP_000 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
     120       130       140       150       160       170         

                
pF1KE1 LQERLRRKE
       ::: :: ::
NP_000 LQESLRSKE
     180        

>>NP_008831 (OMIM: 147578) interferon alpha-1/13 precurs  (190 aa)
 initn: 1042 init1: 1042 opt: 1042  Z-score: 1351.3  bits: 256.7 E(85289): 1.6e-68
Smith-Waterman score: 1042; 85.2% identity (90.5% similar) in 189 aa overlap (1-189:2-190)

                10        20        30        40        50         
pF1KE1  MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDF
        :: ::::::::::::::::::: ::::.:::: .:::.:::::: :::  ::: :::::
NP_008 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE1 RFPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDL
        :::::::::::::: :::::::.::: ::::.:::::.:::: ::::. ::::::::::
NP_008 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE1 EACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSR
       :::::::  :: ::::: ::::::.:::.::::::::::::::::::::::::::.: : 
NP_008 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
              130       140       150       160       170       180

     180         
pF1KE1 NLQERLRRKE
       ::::::::::
NP_008 NLQERLRRKE
              190

>>NP_076918 (OMIM: 147660) interferon alpha-1/13 precurs  (189 aa)
 initn: 1037 init1: 1037 opt: 1037  Z-score: 1344.8  bits: 255.5 E(85289): 3.6e-68
Smith-Waterman score: 1037; 84.7% identity (90.5% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
       :: ::::::.:::::::::::: ::::.:::: .:::.:::::: :::  ::: ::::: 
NP_076 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
       :::::::::::::: :::::::.::: ::::.:::::.:::: ::::. :::::::::::
NP_076 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
       ::::::  :: ::::: ::::::.:::.::::::::::::::::::::::::::.: : :
NP_076 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
              130       140       150       160       170       180

                
pF1KE1 LQERLRRKE
       :::::::::
NP_076 LQERLRRKE
                

>>NP_066546 (OMIM: 147564) interferon alpha-4 precursor   (189 aa)
 initn: 1022 init1: 1007 opt: 1007  Z-score: 1306.2  bits: 248.4 E(85289): 5.1e-66
Smith-Waterman score: 1007; 81.5% identity (92.6% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
       ::: :.::::..::: :: ::: ::::::::::.::...::::: ::: :::::::::: 
NP_066 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
       ::.:::::.:::::.:::::::.::::::::::.:::.::.. ::.:. :::::::::::
NP_066 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
       :::.::: :  :::::::::::::::::::::::::::::::::::::::::::.: : :
NP_066 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KE1 LQERLRRKE
       ::.:::::.
NP_066 LQKRLRRKD
                

>>NP_002162 (OMIM: 147577) interferon alpha-10 precursor  (189 aa)
 initn: 1020 init1: 1005 opt: 1005  Z-score: 1303.6  bits: 247.9 E(85289): 7.2e-66
Smith-Waterman score: 1005; 81.0% identity (92.6% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
       ::: :.::::..::: :: ::: ::::::::::.::...::.:: ::: :::::::::::
NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
       .:::::::::::::.:::::::.::::::::::.:::.::.. ::.:. :::::::::::
NP_002 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
       :::.::: :  ::::::::::::::::::::::: :.:::::::::::::::::.: : :
NP_002 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KE1 LQERLRRKE
       ::.:::::.
NP_002 LQKRLRRKD
                

>>NP_002166 (OMIM: 147584) interferon alpha-21 precursor  (189 aa)
 initn: 1000 init1: 1000 opt: 1000  Z-score: 1297.1  bits: 246.7 E(85289): 1.6e-65
Smith-Waterman score: 1000; 81.5% identity (91.5% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
       ::: :.::::..::: :: ::: ::::::::::.::...::::: ::: :::::::::: 
NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
       ::::::::::::::.:::::::.::::::::::::::..:.. ::.:. ::: :::::::
NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
       :::.::: :  ::::: ::::::.:::::::::::::::::::::::::::::::: :. 
NP_002 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
              130       140       150       160       170       180

                
pF1KE1 LQERLRRKE
       .::::::::
NP_002 FQERLRRKE
                

>>NP_067091 (OMIM: 147583) interferon alpha-17 precursor  (189 aa)
 initn: 999 init1: 984 opt: 984  Z-score: 1276.5  bits: 242.9 E(85289): 2.3e-64
Smith-Waterman score: 984; 79.9% identity (92.1% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
       ::: :.::::..::: :: ::: ::::::::::.::...::::: ::: :::::::::: 
NP_067 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
       .::::::::::::..:::::::.::::::::::.:::.::.. ::.:. ::::::::.::
NP_067 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
       :::.::: .  :::::::::::::::::::::::::::::::::::::::::::.: : :
NP_067 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KE1 LQERLRRKE
       ::. ::::.
NP_067 LQKILRRKD
                




189 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:49:20 2016 done: Sun Nov  6 15:49:21 2016
 Total Scan time:  5.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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