FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1672, 189 aa 1>>>pF1KE1672 189 - 189 aa - 189 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9868+/-0.000367; mu= 14.5991+/- 0.023 mean_var=60.1565+/-11.900, 0's: 0 Z-trim(113.3): 35 B-trim: 96 in 1/51 Lambda= 0.165361 statistics sampled from 22586 (22613) to 22586 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.265), width: 16 Scan time: 5.590 The best scores are: opt bits E(85289) NP_066282 (OMIM: 147566) interferon alpha-6 precur ( 189) 1258 308.3 4.8e-84 NP_002160 (OMIM: 147565) interferon alpha-5 precur ( 189) 1074 264.4 7.9e-71 NP_002163 (OMIM: 147579) interferon alpha-14 precu ( 189) 1052 259.1 3e-69 NP_000596 (OMIM: 147562) interferon alpha-2 precur ( 188) 1043 257.0 1.3e-68 NP_008831 (OMIM: 147578) interferon alpha-1/13 pre ( 190) 1042 256.7 1.6e-68 NP_076918 (OMIM: 147660) interferon alpha-1/13 pre ( 189) 1037 255.5 3.6e-68 NP_066546 (OMIM: 147564) interferon alpha-4 precur ( 189) 1007 248.4 5.1e-66 NP_002162 (OMIM: 147577) interferon alpha-10 precu ( 189) 1005 247.9 7.2e-66 NP_002166 (OMIM: 147584) interferon alpha-21 precu ( 189) 1000 246.7 1.6e-65 NP_067091 (OMIM: 147583) interferon alpha-17 precu ( 189) 984 242.9 2.3e-64 NP_002164 (OMIM: 147580) interferon alpha-16 precu ( 189) 975 240.8 1e-63 NP_002161 (OMIM: 147568) interferon alpha-8 precur ( 189) 964 238.1 6.3e-63 NP_066401 (OMIM: 147567) interferon alpha-7 precur ( 189) 959 236.9 1.4e-62 NP_002168 (OMIM: 147553) interferon omega-1 precur ( 195) 683 171.1 9.8e-43 NP_795372 (OMIM: 615223) interferon epsilon precur ( 208) 345 90.5 1.9e-18 NP_002167 (OMIM: 147640) interferon beta precursor ( 187) 308 81.6 8.1e-16 NP_064509 (OMIM: 615326) interferon kappa precurso ( 207) 159 46.1 4.4e-05 >>NP_066282 (OMIM: 147566) interferon alpha-6 precursor (189 aa) initn: 1258 init1: 1258 opt: 1258 Z-score: 1629.8 bits: 308.3 E(85289): 4.8e-84 Smith-Waterman score: 1258; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::::::::: NP_066 LQERLRRKE >>NP_002160 (OMIM: 147565) interferon alpha-5 precursor (189 aa) initn: 1074 init1: 1074 opt: 1074 Z-score: 1392.5 bits: 264.4 E(85289): 7.9e-71 Smith-Waterman score: 1074; 86.2% identity (93.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR :::::.::::::::.::: ::: :::::::::..:::.:..::: ::: :::::::::: NP_002 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE ::::::::::::::.:::::::.::::::::::::::..::: ::::.:::::::::::: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN ::.:::: : ::::: ::::.:::::::::::::::::::::::::::::::::: : : NP_002 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::::::::: NP_002 LQERLRRKE >>NP_002163 (OMIM: 147579) interferon alpha-14 precursor (189 aa) initn: 1104 init1: 1052 opt: 1052 Z-score: 1364.2 bits: 259.1 E(85289): 3e-69 Smith-Waterman score: 1052; 83.1% identity (94.2% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR :::::::.:::::::::::::: :.: :::::..:::.::.::::::: ::::::::::. NP_002 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE ::::::::::::::.:::::::..::::::::::.::.:::: ::.:.: ::.::.:::: NP_002 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN :::.::: : ::::::::::::.:::::::::: :::::::::::::::::::.: : : NP_002 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::.:::::. NP_002 LQKRLRRKD >>NP_000596 (OMIM: 147562) interferon alpha-2 precursor (188 aa) initn: 1041 init1: 660 opt: 1043 Z-score: 1352.6 bits: 257.0 E(85289): 1.3e-68 Smith-Waterman score: 1043; 85.7% identity (91.0% similar) in 189 aa overlap (1-189:1-188) 10 20 30 40 50 60 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR ::: ::::.::.:::::::::. :::::::::: :::.::::::::::::::::::::: NP_000 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE :::::: ::::::::.: ::::.::: ::::::::::.:::: ::::.:::::::::::: NP_000 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN :::.: : : ::::.:::::::::::::::::: ::::::::::::::::::::: : : NP_000 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 120 130 140 150 160 170 pF1KE1 LQERLRRKE ::: :: :: NP_000 LQESLRSKE 180 >>NP_008831 (OMIM: 147578) interferon alpha-1/13 precurs (190 aa) initn: 1042 init1: 1042 opt: 1042 Z-score: 1351.3 bits: 256.7 E(85289): 1.6e-68 Smith-Waterman score: 1042; 85.2% identity (90.5% similar) in 189 aa overlap (1-189:2-190) 10 20 30 40 50 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDF :: ::::::::::::::::::: ::::.:::: .:::.:::::: ::: ::: ::::: NP_008 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 RFPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDL :::::::::::::: :::::::.::: ::::.:::::.:::: ::::. :::::::::: NP_008 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 EACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSR ::::::: :: ::::: ::::::.:::.::::::::::::::::::::::::::.: : NP_008 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST 130 140 150 160 170 180 180 pF1KE1 NLQERLRRKE :::::::::: NP_008 NLQERLRRKE 190 >>NP_076918 (OMIM: 147660) interferon alpha-1/13 precurs (189 aa) initn: 1037 init1: 1037 opt: 1037 Z-score: 1344.8 bits: 255.5 E(85289): 3.6e-68 Smith-Waterman score: 1037; 84.7% identity (90.5% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR :: ::::::.:::::::::::: ::::.:::: .:::.:::::: ::: ::: ::::: NP_076 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE :::::::::::::: :::::::.::: ::::.:::::.:::: ::::. ::::::::::: NP_076 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN :::::: :: ::::: ::::::.:::.::::::::::::::::::::::::::.: : : NP_076 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::::::::: NP_076 LQERLRRKE >>NP_066546 (OMIM: 147564) interferon alpha-4 precursor (189 aa) initn: 1022 init1: 1007 opt: 1007 Z-score: 1306.2 bits: 248.4 E(85289): 5.1e-66 Smith-Waterman score: 1007; 81.5% identity (92.6% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR ::: :.::::..::: :: ::: ::::::::::.::...::::: ::: :::::::::: NP_066 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE ::.:::::.:::::.:::::::.::::::::::.:::.::.. ::.:. ::::::::::: NP_066 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN :::.::: : :::::::::::::::::::::::::::::::::::::::::::.: : : NP_066 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::.:::::. NP_066 LQKRLRRKD >>NP_002162 (OMIM: 147577) interferon alpha-10 precursor (189 aa) initn: 1020 init1: 1005 opt: 1005 Z-score: 1303.6 bits: 247.9 E(85289): 7.2e-66 Smith-Waterman score: 1005; 81.0% identity (92.6% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR ::: :.::::..::: :: ::: ::::::::::.::...::.:: ::: ::::::::::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE .:::::::::::::.:::::::.::::::::::.:::.::.. ::.:. ::::::::::: NP_002 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN :::.::: : ::::::::::::::::::::::: :.:::::::::::::::::.: : : NP_002 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::.:::::. NP_002 LQKRLRRKD >>NP_002166 (OMIM: 147584) interferon alpha-21 precursor (189 aa) initn: 1000 init1: 1000 opt: 1000 Z-score: 1297.1 bits: 246.7 E(85289): 1.6e-65 Smith-Waterman score: 1000; 81.5% identity (91.5% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR ::: :.::::..::: :: ::: ::::::::::.::...::::: ::: :::::::::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE ::::::::::::::.:::::::.::::::::::::::..:.. ::.:. ::: ::::::: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN :::.::: : ::::: ::::::.:::::::::::::::::::::::::::::::: :. NP_002 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 130 140 150 160 170 180 pF1KE1 LQERLRRKE .:::::::: NP_002 FQERLRRKE >>NP_067091 (OMIM: 147583) interferon alpha-17 precursor (189 aa) initn: 999 init1: 984 opt: 984 Z-score: 1276.5 bits: 242.9 E(85289): 2.3e-64 Smith-Waterman score: 984; 79.9% identity (92.1% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR ::: :.::::..::: :: ::: ::::::::::.::...::::: ::: :::::::::: NP_067 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE .::::::::::::..:::::::.::::::::::.:::.::.. ::.:. ::::::::.:: NP_067 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN :::.::: . :::::::::::::::::::::::::::::::::::::::::::.: : : NP_067 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::. ::::. NP_067 LQKILRRKD 189 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:49:20 2016 done: Sun Nov 6 15:49:21 2016 Total Scan time: 5.590 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]