FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3049, 189 aa 1>>>pF1KE3049 189 - 189 aa - 189 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1839+/-0.000377; mu= 13.9375+/- 0.023 mean_var=60.8484+/-12.450, 0's: 0 Z-trim(112.0): 17 B-trim: 550 in 1/51 Lambda= 0.164418 statistics sampled from 20704 (20721) to 20704 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.243), width: 16 Scan time: 5.610 The best scores are: opt bits E(85289) NP_002163 (OMIM: 147579) interferon alpha-14 precu ( 189) 1247 304.0 9.1e-83 NP_002160 (OMIM: 147565) interferon alpha-5 precur ( 189) 1091 267.0 1.3e-71 NP_002162 (OMIM: 147577) interferon alpha-10 precu ( 189) 1072 262.5 2.8e-70 NP_066546 (OMIM: 147564) interferon alpha-4 precur ( 189) 1059 259.4 2.4e-69 NP_066282 (OMIM: 147566) interferon alpha-6 precur ( 189) 1052 257.8 7.6e-69 NP_067091 (OMIM: 147583) interferon alpha-17 precu ( 189) 1049 257.1 1.2e-68 NP_002164 (OMIM: 147580) interferon alpha-16 precu ( 189) 1040 254.9 5.5e-68 NP_008831 (OMIM: 147578) interferon alpha-1/13 pre ( 190) 1038 254.5 7.7e-68 NP_076918 (OMIM: 147660) interferon alpha-1/13 pre ( 189) 1033 253.3 1.7e-67 NP_066401 (OMIM: 147567) interferon alpha-7 precur ( 189) 1030 252.6 2.8e-67 NP_002166 (OMIM: 147584) interferon alpha-21 precu ( 189) 1026 251.6 5.5e-67 NP_000596 (OMIM: 147562) interferon alpha-2 precur ( 188) 1024 251.1 7.6e-67 NP_002161 (OMIM: 147568) interferon alpha-8 precur ( 189) 994 244.0 1.1e-64 NP_002168 (OMIM: 147553) interferon omega-1 precur ( 195) 699 174.1 1.3e-43 NP_795372 (OMIM: 615223) interferon epsilon precur ( 208) 376 97.5 1.5e-20 NP_002167 (OMIM: 147640) interferon beta precursor ( 187) 338 88.4 7.3e-18 NP_064509 (OMIM: 615326) interferon kappa precurso ( 207) 163 46.9 2.5e-05 >>NP_002163 (OMIM: 147579) interferon alpha-14 precursor (189 aa) initn: 1247 init1: 1247 opt: 1247 Z-score: 1606.9 bits: 304.0 E(85289): 9.1e-83 Smith-Waterman score: 1247; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LQKRLRRKD ::::::::: NP_002 LQKRLRRKD >>NP_002160 (OMIM: 147565) interferon alpha-5 precursor (189 aa) initn: 1091 init1: 1091 opt: 1091 Z-score: 1407.0 bits: 267.0 E(85289): 1.3e-71 Smith-Waterman score: 1091; 84.7% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE :::::.:.::::::.::: :::::.: :::::.::::::.:::: :::::::::::::: NP_002 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE :::::::::::::::::::::::.::::::::::.:::.::::::.::: ::.::.:::: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN ::..::::::.::::: ::::.:.:::::::::: :::::::::::::::::::.:.:.: NP_002 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 pF1KE3 LQKRLRRKD ::.:::::. NP_002 LQERLRRKE >>NP_002162 (OMIM: 147577) interferon alpha-10 precursor (189 aa) initn: 1072 init1: 1072 opt: 1072 Z-score: 1382.6 bits: 262.5 E(85289): 2.8e-70 Smith-Waterman score: 1072; 84.1% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE ::: :.:.::..::: :: :::::.: :::::.:::.:.:..:: ::::::::::::::. NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE .::::::::::::::::::::::.:::::::::..:::::...::::: ::.::.:::: NP_002 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::.::::::::::.:.::::::::::::::::::::::: NP_002 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LQKRLRRKD ::::::::: NP_002 LQKRLRRKD >>NP_066546 (OMIM: 147564) interferon alpha-4 precursor (189 aa) initn: 1059 init1: 1059 opt: 1059 Z-score: 1365.9 bits: 259.4 E(85289): 2.4e-69 Smith-Waterman score: 1059; 84.1% identity (94.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE ::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: ::: :::::::::: NP_066 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE ::.:::::.::::::::::::::.:::::::::..:::::...::::: ::.::.:::: NP_066 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::.:::::::::: ::::::::::::::::::::::::: NP_066 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LQKRLRRKD ::::::::: NP_066 LQKRLRRKD >>NP_066282 (OMIM: 147566) interferon alpha-6 precursor (189 aa) initn: 1104 init1: 1052 opt: 1052 Z-score: 1357.0 bits: 257.8 E(85289): 7.6e-69 Smith-Waterman score: 1052; 83.1% identity (94.2% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE :::::::.:::::::::::::: :.: :::::..:::.::.::::::: ::::::::::. NP_066 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE ::::::::::::::.:::::::..::::::::::.::.:::: ::.:.: ::.::.:::: NP_066 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN :::.::: : ::::::::::::.:::::::::: :::::::::::::::::::.: : : NP_066 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 130 140 150 160 170 180 pF1KE3 LQKRLRRKD ::.:::::. NP_066 LQERLRRKE >>NP_067091 (OMIM: 147583) interferon alpha-17 precursor (189 aa) initn: 1049 init1: 1049 opt: 1049 Z-score: 1353.1 bits: 257.1 E(85289): 1.2e-68 Smith-Waterman score: 1049; 83.1% identity (94.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE ::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: :::::::::::::: NP_067 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE .::::::::::::.:::::::::.:::::::::..:::::...::::: ::.::.:.:: NP_067 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN ::::::::.::::::::::::::.:::::::::: ::::::::::::::::::::::::: NP_067 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LQKRLRRKD ::: ::::: NP_067 LQKILRRKD >>NP_002164 (OMIM: 147580) interferon alpha-16 precursor (189 aa) initn: 1040 init1: 1040 opt: 1040 Z-score: 1341.6 bits: 254.9 E(85289): 5.5e-68 Smith-Waterman score: 1040; 83.6% identity (93.1% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE ::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: ::: :::::::.:: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE :::: :::::::::::::..:::.::::::::::.::::::::::.:::::::::.:::: NP_002 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN ::: ::::::: ::::::::::.::::::::::: ::::::::::::::::::.::::: NP_002 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE3 LQKRLRRKD ::: ::::: NP_002 LQKGLRRKD >>NP_008831 (OMIM: 147578) interferon alpha-1/13 precurs (190 aa) initn: 1099 init1: 1038 opt: 1038 Z-score: 1339.0 bits: 254.5 E(85289): 7.7e-68 Smith-Waterman score: 1038; 82.5% identity (91.5% similar) in 189 aa overlap (1-189:2-190) 10 20 30 40 50 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDF :: ::::.::::::::::::::::.: .::::.:::::::.::: :::: ::: ::::: NP_008 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 EFPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDL :::::::::::::: :::::::..:: ::::.::.::::::: ::.:: ::.::.::: NP_008 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 EACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFST ::::.:: : :::::: ::::::::::.:::::: :::::::::::::::::::::.:: NP_008 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST 130 140 150 160 170 180 180 pF1KE3 NLQKRLRRKD :::.:::::. NP_008 NLQERLRRKE 190 >>NP_076918 (OMIM: 147660) interferon alpha-1/13 precurs (189 aa) initn: 1092 init1: 1033 opt: 1033 Z-score: 1332.6 bits: 253.3 E(85289): 1.7e-67 Smith-Waterman score: 1033; 82.0% identity (91.5% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE :: ::::.:.::::::::::::::.: .::::.:::::::.::: :::: ::: ::::: NP_076 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE :::::::::::::: :::::::..:: ::::.::.::::::: ::.:: ::.::.:::: NP_076 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN :::.:: : :::::: ::::::::::.:::::: :::::::::::::::::::::.::: NP_076 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 130 140 150 160 170 180 pF1KE3 LQKRLRRKD ::.:::::. NP_076 LQERLRRKE >>NP_066401 (OMIM: 147567) interferon alpha-7 precursor (189 aa) initn: 1030 init1: 1030 opt: 1030 Z-score: 1328.8 bits: 252.6 E(85289): 2.8e-67 Smith-Waterman score: 1030; 81.0% identity (94.2% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE :: :.:.:...::: :: :::::.: ::::: :::.:.:.::: ::::::::::::.:. NP_066 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE ::.:::::.::::.:::::::::.:::::::::..:::::...::::: ::.::.:::: NP_066 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::: ::::.::::::::::::::::::::::::::::::.::::: NP_066 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE3 LQKRLRRKD :.: ::::: NP_066 LKKGLRRKD 189 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:54:37 2016 done: Sun Nov 6 04:54:38 2016 Total Scan time: 5.610 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]