FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3049, 189 aa 1>>>pF1KE3049 189 - 189 aa - 189 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3268+/-0.000857; mu= 12.7114+/- 0.051 mean_var=60.3871+/-11.981, 0's: 0 Z-trim(105.1): 20 B-trim: 0 in 0/50 Lambda= 0.165045 statistics sampled from 8237 (8254) to 8237 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.254), width: 16 Scan time: 1.890 The best scores are: opt bits E(32554) CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1247 305.2 1.6e-83 CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1091 268.0 2.4e-72 CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 1072 263.5 5.5e-71 CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 1059 260.4 4.7e-70 CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 1052 258.8 1.5e-69 CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 1049 258.0 2.4e-69 CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 1040 255.9 1.1e-68 CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 1038 255.4 1.5e-68 CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 1033 254.2 3.4e-68 CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 1030 253.5 5.6e-68 CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1026 252.6 1.1e-67 CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 1024 252.1 1.5e-67 CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 994 244.9 2.1e-65 CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 699 174.7 3.1e-44 CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 376 97.8 4.6e-21 CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 338 88.7 2.2e-18 >>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa) initn: 1247 init1: 1247 opt: 1247 Z-score: 1613.1 bits: 305.2 E(32554): 1.6e-83 Smith-Waterman score: 1247; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LQKRLRRKD ::::::::: CCDS65 LQKRLRRKD >>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa) initn: 1091 init1: 1091 opt: 1091 Z-score: 1412.4 bits: 268.0 E(32554): 2.4e-72 Smith-Waterman score: 1091; 84.7% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE :::::.:.::::::.::: :::::.: :::::.::::::.:::: :::::::::::::: CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE :::::::::::::::::::::::.::::::::::.:::.::::::.::: ::.::.:::: CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN ::..::::::.::::: ::::.:.:::::::::: :::::::::::::::::::.:.:.: CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 pF1KE3 LQKRLRRKD ::.:::::. CCDS65 LQERLRRKE >>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa) initn: 1072 init1: 1072 opt: 1072 Z-score: 1387.9 bits: 263.5 E(32554): 5.5e-71 Smith-Waterman score: 1072; 84.1% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE ::: :.:.::..::: :: :::::.: :::::.:::.:.:..:: ::::::::::::::. CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE .::::::::::::::::::::::.:::::::::..:::::...::::: ::.::.:::: CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::.::::::::::.:.::::::::::::::::::::::: CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LQKRLRRKD ::::::::: CCDS64 LQKRLRRKD >>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa) initn: 1059 init1: 1059 opt: 1059 Z-score: 1371.2 bits: 260.4 E(32554): 4.7e-70 Smith-Waterman score: 1059; 84.1% identity (94.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE ::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: ::: :::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE ::.:::::.::::::::::::::.:::::::::..:::::...::::: ::.::.:::: CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::.:::::::::: ::::::::::::::::::::::::: CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LQKRLRRKD ::::::::: CCDS64 LQKRLRRKD >>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa) initn: 1104 init1: 1052 opt: 1052 Z-score: 1362.2 bits: 258.8 E(32554): 1.5e-69 Smith-Waterman score: 1052; 83.1% identity (94.2% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE :::::::.:::::::::::::: :.: :::::..:::.::.::::::: ::::::::::. CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE ::::::::::::::.:::::::..::::::::::.::.:::: ::.:.: ::.::.:::: CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN :::.::: : ::::::::::::.:::::::::: :::::::::::::::::::.: : : CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 130 140 150 160 170 180 pF1KE3 LQKRLRRKD ::.:::::. CCDS65 LQERLRRKE >>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa) initn: 1049 init1: 1049 opt: 1049 Z-score: 1358.3 bits: 258.0 E(32554): 2.4e-69 Smith-Waterman score: 1049; 83.1% identity (94.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE ::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: :::::::::::::: CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE .::::::::::::.:::::::::.:::::::::..:::::...::::: ::.::.:.:: CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN ::::::::.::::::::::::::.:::::::::: ::::::::::::::::::::::::: CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LQKRLRRKD ::: ::::: CCDS65 LQKILRRKD >>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 (189 aa) initn: 1040 init1: 1040 opt: 1040 Z-score: 1346.7 bits: 255.9 E(32554): 1.1e-68 Smith-Waterman score: 1040; 83.6% identity (93.1% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE ::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: ::: :::::::.:: CCDS34 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE :::: :::::::::::::..:::.::::::::::.::::::::::.:::::::::.:::: CCDS34 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN ::: ::::::: ::::::::::.::::::::::: ::::::::::::::::::.::::: CCDS34 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE3 LQKRLRRKD ::: ::::: CCDS34 LQKGLRRKD >>CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 (190 aa) initn: 1099 init1: 1038 opt: 1038 Z-score: 1344.1 bits: 255.4 E(32554): 1.5e-68 Smith-Waterman score: 1038; 82.5% identity (91.5% similar) in 189 aa overlap (1-189:2-190) 10 20 30 40 50 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDF :: ::::.::::::::::::::::.: .::::.:::::::.::: :::: ::: ::::: CCDS65 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 EFPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDL :::::::::::::: :::::::..:: ::::.::.::::::: ::.:: ::.::.::: CCDS65 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 EACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFST ::::.:: : :::::: ::::::::::.:::::: :::::::::::::::::::::.:: CCDS65 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST 130 140 150 160 170 180 180 pF1KE3 NLQKRLRRKD :::.:::::. CCDS65 NLQERLRRKE 190 >>CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 (189 aa) initn: 1092 init1: 1033 opt: 1033 Z-score: 1337.7 bits: 254.2 E(32554): 3.4e-68 Smith-Waterman score: 1033; 82.0% identity (91.5% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE :: ::::.:.::::::::::::::.: .::::.:::::::.::: :::: ::: ::::: CCDS65 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE :::::::::::::: :::::::..:: ::::.::.::::::: ::.:: ::.::.:::: CCDS65 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN :::.:: : :::::: ::::::::::.:::::: :::::::::::::::::::::.::: CCDS65 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 130 140 150 160 170 180 pF1KE3 LQKRLRRKD ::.:::::. CCDS65 LQERLRRKE >>CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 (189 aa) initn: 1030 init1: 1030 opt: 1030 Z-score: 1333.9 bits: 253.5 E(32554): 5.6e-68 Smith-Waterman score: 1030; 81.0% identity (94.2% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE :: :.:.:...::: :: :::::.: ::::: :::.:.:.::: ::::::::::::.:. CCDS34 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE ::.:::::.::::.:::::::::.:::::::::..:::::...::::: ::.::.:::: CCDS34 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::: ::::.::::::::::::::::::::::::::::::.::::: CCDS34 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE3 LQKRLRRKD :.: ::::: CCDS34 LKKGLRRKD 189 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:54:37 2016 done: Sun Nov 6 04:54:37 2016 Total Scan time: 1.890 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]