FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1673, 189 aa 1>>>pF1KE1673 189 - 189 aa - 189 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2969+/-0.000388; mu= 12.9919+/- 0.024 mean_var=67.0043+/-13.076, 0's: 0 Z-trim(112.6): 17 B-trim: 0 in 0/51 Lambda= 0.156683 statistics sampled from 21512 (21529) to 21512 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.252), width: 16 Scan time: 5.650 The best scores are: opt bits E(85289) NP_002162 (OMIM: 147577) interferon alpha-10 precu ( 189) 1233 287.4 9e-78 NP_066546 (OMIM: 147564) interferon alpha-4 precur ( 189) 1177 274.8 5.8e-74 NP_067091 (OMIM: 147583) interferon alpha-17 precu ( 189) 1176 274.6 6.8e-74 NP_066401 (OMIM: 147567) interferon alpha-7 precur ( 189) 1140 266.4 1.9e-71 NP_002166 (OMIM: 147584) interferon alpha-21 precu ( 189) 1125 263.0 2e-70 NP_002164 (OMIM: 147580) interferon alpha-16 precu ( 189) 1081 253.1 2e-67 NP_002163 (OMIM: 147579) interferon alpha-14 precu ( 189) 1072 251.1 8.1e-67 NP_002160 (OMIM: 147565) interferon alpha-5 precur ( 189) 1058 247.9 7.3e-66 NP_066282 (OMIM: 147566) interferon alpha-6 precur ( 189) 1005 235.9 2.9e-62 NP_002161 (OMIM: 147568) interferon alpha-8 precur ( 189) 991 232.7 2.6e-61 NP_008831 (OMIM: 147578) interferon alpha-1/13 pre ( 190) 990 232.5 3.1e-61 NP_000596 (OMIM: 147562) interferon alpha-2 precur ( 188) 988 232.1 4.2e-61 NP_076918 (OMIM: 147660) interferon alpha-1/13 pre ( 189) 985 231.4 6.8e-61 NP_002168 (OMIM: 147553) interferon omega-1 precur ( 195) 725 172.6 3.4e-43 NP_795372 (OMIM: 615223) interferon epsilon precur ( 208) 361 90.4 2.1e-18 NP_002167 (OMIM: 147640) interferon beta precursor ( 187) 325 82.2 5.5e-16 NP_064509 (OMIM: 615326) interferon kappa precurso ( 207) 163 45.6 6.3e-05 >>NP_002162 (OMIM: 147577) interferon alpha-10 precursor (189 aa) initn: 1233 init1: 1233 opt: 1233 Z-score: 1517.2 bits: 287.4 E(85289): 9e-78 Smith-Waterman score: 1233; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLRRKD ::::::::: NP_002 LQKRLRRKD >>NP_066546 (OMIM: 147564) interferon alpha-4 precursor (189 aa) initn: 1177 init1: 1177 opt: 1177 Z-score: 1448.8 bits: 274.8 E(85289): 5.8e-74 Smith-Waterman score: 1177; 95.8% identity (98.4% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR :::::::::::::::::::::::::::::::::::::::::.:::::: :::::::::: NP_066 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .:.:::::.::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::::::::::::: :.::::::::::::::::::::::: NP_066 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLRRKD ::::::::: NP_066 LQKRLRRKD >>NP_067091 (OMIM: 147583) interferon alpha-17 precursor (189 aa) initn: 1176 init1: 1176 opt: 1176 Z-score: 1447.6 bits: 274.6 E(85289): 6.8e-74 Smith-Waterman score: 1176; 95.2% identity (98.4% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR :::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: NP_067 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .::::::::::::.:::::::::::::::::::::::::::::::::::::::::::.:: NP_067 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN ::::::::.::::::::::::::::::::::::: :.::::::::::::::::::::::: NP_067 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLRRKD ::: ::::: NP_067 LQKILRRKD >>NP_066401 (OMIM: 147567) interferon alpha-7 precursor (189 aa) initn: 1140 init1: 1140 opt: 1140 Z-score: 1403.6 bits: 266.4 E(85289): 1.9e-71 Smith-Waterman score: 1140; 92.1% identity (97.9% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR :: ::::::.:::::::::::::::::::::: ::::::::.:::::::::::::::.:: NP_066 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .:.:::::.::::.:::::::::::::::::::::::::::::::::::::::::::::: NP_066 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::: :::::::::::::::.:.:::::::::::::::::.::::: NP_066 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLRRKD :.: ::::: NP_066 LKKGLRRKD >>NP_002166 (OMIM: 147584) interferon alpha-21 precursor (189 aa) initn: 1162 init1: 1125 opt: 1125 Z-score: 1385.3 bits: 263.0 E(85289): 2e-70 Smith-Waterman score: 1125; 91.0% identity (96.8% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR :::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .::::::::::::::::::::::::::::::::.::::.::::::::::::: ::::::: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::: ::::::.:::::::::: :.:::::::::::::::::.:.: NP_002 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 130 140 150 160 170 180 pF1KE1 LQKRLRRKD .:.:::::. NP_002 FQERLRRKE >>NP_002164 (OMIM: 147580) interferon alpha-16 precursor (189 aa) initn: 1081 init1: 1081 opt: 1081 Z-score: 1331.6 bits: 253.1 E(85289): 2e-67 Smith-Waterman score: 1081; 87.3% identity (94.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR :::::::::::::::::::::::::::::::::::::::::.:::::: :::::::.:: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .::: :::::::::::::..:::::::::::::.::::::...::.:: ::.::::::: NP_002 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN ::: ::::::: :::::::::::::::::::::. .:::::::::::::::::.::::: NP_002 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLRRKD ::: ::::: NP_002 LQKGLRRKD >>NP_002163 (OMIM: 147579) interferon alpha-14 precursor (189 aa) initn: 1072 init1: 1072 opt: 1072 Z-score: 1320.6 bits: 251.1 E(85289): 8.1e-67 Smith-Waterman score: 1072; 84.1% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR ::: :.:.::..::: :: :::::.: :::::.:::.:.:..:: ::::::::::::::. NP_002 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .::::::::::::::::::::::.:::::::::..:::::...::::: ::.::.:::: NP_002 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::.::::::::::.:.::::::::::::::::::::::: NP_002 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLRRKD ::::::::: NP_002 LQKRLRRKD >>NP_002160 (OMIM: 147565) interferon alpha-5 precursor (189 aa) initn: 1073 init1: 1058 opt: 1058 Z-score: 1303.5 bits: 247.9 E(85289): 7.3e-66 Smith-Waterman score: 1058; 82.5% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR ::: : ::::..::. ::::::::::::::::.:::.:....::::::::::::::::: NP_002 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .::::::::::::::::::::::::::::::::.::::.:...::.:: ::::::::::: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN ::..::::::.::::: ::::.:::::::::::: :.:::::::::::::::::.:.:.: NP_002 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 pF1KE1 LQKRLRRKD ::.:::::. NP_002 LQERLRRKE >>NP_066282 (OMIM: 147566) interferon alpha-6 precursor (189 aa) initn: 1020 init1: 1005 opt: 1005 Z-score: 1238.7 bits: 235.9 E(85289): 2.9e-62 Smith-Waterman score: 1005; 81.0% identity (92.6% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR ::: :.::::..::: :: ::: ::::::::::.::...::.:: ::: ::::::::::: NP_066 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .:::::::::::::.:::::::.::::::::::.:::.::.. ::.:. ::::::::::: NP_066 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN :::.::: : ::::::::::::::::::::::: :.:::::::::::::::::.: : : NP_066 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 130 140 150 160 170 180 pF1KE1 LQKRLRRKD ::.:::::. NP_066 LQERLRRKE >>NP_002161 (OMIM: 147568) interferon alpha-8 precursor (189 aa) initn: 1012 init1: 991 opt: 991 Z-score: 1221.6 bits: 232.7 E(85289): 2.6e-61 Smith-Waterman score: 991; 80.4% identity (92.6% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR :::.: ::.:..::::::. :::::::::::::::::::::.:: ::::::::::::::. NP_002 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .:::::: .::::::::::::::::::::::::.::::: ...::..: :: ::::::: NP_002 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN .::.::::: :.::: :::::::::::::::::: :.::: :::::::::::::.:.: : NP_002 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 130 140 150 160 170 180 pF1KE1 LQKRLRRKD :::::. :. NP_002 LQKRLKSKE 189 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:50:34 2016 done: Sun Nov 6 05:50:35 2016 Total Scan time: 5.650 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]