FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1673, 189 aa 1>>>pF1KE1673 189 - 189 aa - 189 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5975+/-0.00086; mu= 11.1030+/- 0.051 mean_var=64.2476+/-12.947, 0's: 0 Z-trim(105.9): 22 B-trim: 0 in 0/49 Lambda= 0.160009 statistics sampled from 8635 (8653) to 8635 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.266), width: 16 Scan time: 1.950 The best scores are: opt bits E(32554) CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 1233 293.2 6.5e-80 CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 1177 280.2 5.1e-76 CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 1176 280.0 6e-76 CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 1140 271.7 1.9e-73 CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1125 268.2 2.1e-72 CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 1081 258.1 2.4e-69 CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1072 256.0 1e-68 CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1058 252.8 9.4e-68 CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 1005 240.5 4.6e-64 CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 991 237.3 4.3e-63 CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 990 237.1 5e-63 CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 988 236.6 6.9e-63 CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 985 235.9 1.1e-62 CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 725 175.9 1.3e-44 CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 361 91.9 2.8e-19 CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 325 83.6 8.1e-17 >>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa) initn: 1233 init1: 1233 opt: 1233 Z-score: 1548.2 bits: 293.2 E(32554): 6.5e-80 Smith-Waterman score: 1233; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLRRKD ::::::::: CCDS64 LQKRLRRKD >>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa) initn: 1177 init1: 1177 opt: 1177 Z-score: 1478.3 bits: 280.2 E(32554): 5.1e-76 Smith-Waterman score: 1177; 95.8% identity (98.4% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR :::::::::::::::::::::::::::::::::::::::::.:::::: :::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .:.:::::.::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::::::::::::: :.::::::::::::::::::::::: CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLRRKD ::::::::: CCDS64 LQKRLRRKD >>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa) initn: 1176 init1: 1176 opt: 1176 Z-score: 1477.0 bits: 280.0 E(32554): 6e-76 Smith-Waterman score: 1176; 95.2% identity (98.4% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR :::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .::::::::::::.:::::::::::::::::::::::::::::::::::::::::::.:: CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN ::::::::.::::::::::::::::::::::::: :.::::::::::::::::::::::: CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLRRKD ::: ::::: CCDS65 LQKILRRKD >>CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 (189 aa) initn: 1140 init1: 1140 opt: 1140 Z-score: 1432.1 bits: 271.7 E(32554): 1.9e-73 Smith-Waterman score: 1140; 92.1% identity (97.9% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR :: ::::::.:::::::::::::::::::::: ::::::::.:::::::::::::::.:: CCDS34 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .:.:::::.::::.:::::::::::::::::::::::::::::::::::::::::::::: CCDS34 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::: :::::::::::::::.:.:::::::::::::::::.::::: CCDS34 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLRRKD :.: ::::: CCDS34 LKKGLRRKD >>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa) initn: 1162 init1: 1125 opt: 1125 Z-score: 1413.4 bits: 268.2 E(32554): 2.1e-72 Smith-Waterman score: 1125; 91.0% identity (96.8% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR :::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .::::::::::::::::::::::::::::::::.::::.::::::::::::: ::::::: CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::: ::::::.:::::::::: :.:::::::::::::::::.:.: CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 130 140 150 160 170 180 pF1KE1 LQKRLRRKD .:.:::::. CCDS64 FQERLRRKE >>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 (189 aa) initn: 1081 init1: 1081 opt: 1081 Z-score: 1358.5 bits: 258.1 E(32554): 2.4e-69 Smith-Waterman score: 1081; 87.3% identity (94.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR :::::::::::::::::::::::::::::::::::::::::.:::::: :::::::.:: CCDS34 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .::: :::::::::::::..:::::::::::::.::::::...::.:: ::.::::::: CCDS34 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN ::: ::::::: :::::::::::::::::::::. .:::::::::::::::::.::::: CCDS34 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLRRKD ::: ::::: CCDS34 LQKGLRRKD >>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa) initn: 1072 init1: 1072 opt: 1072 Z-score: 1347.3 bits: 256.0 E(32554): 1e-68 Smith-Waterman score: 1072; 84.1% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR ::: :.:.::..::: :: :::::.: :::::.:::.:.:..:: ::::::::::::::. CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .::::::::::::::::::::::.:::::::::..:::::...::::: ::.::.:::: CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::.::::::::::.:.::::::::::::::::::::::: CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLRRKD ::::::::: CCDS65 LQKRLRRKD >>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa) initn: 1073 init1: 1058 opt: 1058 Z-score: 1329.8 bits: 252.8 E(32554): 9.4e-68 Smith-Waterman score: 1058; 82.5% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR ::: : ::::..::. ::::::::::::::::.:::.:....::::::::::::::::: CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .::::::::::::::::::::::::::::::::.::::.:...::.:: ::::::::::: CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN ::..::::::.::::: ::::.:::::::::::: :.:::::::::::::::::.:.:.: CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 pF1KE1 LQKRLRRKD ::.:::::. CCDS65 LQERLRRKE >>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa) initn: 1020 init1: 1005 opt: 1005 Z-score: 1263.7 bits: 240.5 E(32554): 4.6e-64 Smith-Waterman score: 1005; 81.0% identity (92.6% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR ::: :.::::..::: :: ::: ::::::::::.::...::.:: ::: ::::::::::: CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .:::::::::::::.:::::::.::::::::::.:::.::.. ::.:. ::::::::::: CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN :::.::: : ::::::::::::::::::::::: :.:::::::::::::::::.: : : CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 130 140 150 160 170 180 pF1KE1 LQKRLRRKD ::.:::::. CCDS65 LQERLRRKE >>CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 (189 aa) initn: 1012 init1: 991 opt: 991 Z-score: 1246.2 bits: 237.3 E(32554): 4.3e-63 Smith-Waterman score: 991; 80.4% identity (92.6% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR :::.: ::.:..::::::. :::::::::::::::::::::.:: ::::::::::::::. CCDS65 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .:::::: .::::::::::::::::::::::::.::::: ...::..: :: ::::::: CCDS65 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN .::.::::: :.::: :::::::::::::::::: :.::: :::::::::::::.:.: : CCDS65 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 130 140 150 160 170 180 pF1KE1 LQKRLRRKD :::::. :. CCDS65 LQKRLKSKE 189 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:50:33 2016 done: Sun Nov 6 05:50:34 2016 Total Scan time: 1.950 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]