FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2100, 189 aa 1>>>pF1KE2100 189 - 189 aa - 189 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2371+/-0.000369; mu= 13.1644+/- 0.023 mean_var=62.1155+/-12.487, 0's: 0 Z-trim(112.6): 18 B-trim: 36 in 1/52 Lambda= 0.162732 statistics sampled from 21511 (21528) to 21511 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.252), width: 16 Scan time: 4.700 The best scores are: opt bits E(85289) NP_066546 (OMIM: 147564) interferon alpha-4 precur ( 189) 1230 297.2 1.1e-80 NP_067091 (OMIM: 147583) interferon alpha-17 precu ( 189) 1182 285.9 2.6e-77 NP_002162 (OMIM: 147577) interferon alpha-10 precu ( 189) 1172 283.6 1.3e-76 NP_066401 (OMIM: 147567) interferon alpha-7 precur ( 189) 1149 278.2 5.6e-75 NP_002166 (OMIM: 147584) interferon alpha-21 precu ( 189) 1130 273.7 1.2e-73 NP_002164 (OMIM: 147580) interferon alpha-16 precu ( 189) 1101 266.9 1.4e-71 NP_002160 (OMIM: 147565) interferon alpha-5 precur ( 189) 1063 258.0 6.7e-69 NP_002163 (OMIM: 147579) interferon alpha-14 precu ( 189) 1054 255.9 2.9e-68 NP_000596 (OMIM: 147562) interferon alpha-2 precur ( 188) 1002 243.6 1.4e-64 NP_066282 (OMIM: 147566) interferon alpha-6 precur ( 189) 1002 243.7 1.4e-64 NP_008831 (OMIM: 147578) interferon alpha-1/13 pre ( 190) 995 242.0 4.3e-64 NP_076918 (OMIM: 147660) interferon alpha-1/13 pre ( 189) 990 240.8 9.7e-64 NP_002161 (OMIM: 147568) interferon alpha-8 precur ( 189) 988 240.4 1.3e-63 NP_002168 (OMIM: 147553) interferon omega-1 precur ( 195) 704 173.7 1.6e-43 NP_795372 (OMIM: 615223) interferon epsilon precur ( 208) 355 91.8 7.9e-19 NP_002167 (OMIM: 147640) interferon beta precursor ( 187) 335 87.1 1.9e-17 NP_064509 (OMIM: 615326) interferon kappa precurso ( 207) 168 47.9 1.3e-05 >>NP_066546 (OMIM: 147564) interferon alpha-4 precursor (189 aa) initn: 1230 init1: 1230 opt: 1230 Z-score: 1569.8 bits: 297.2 E(85289): 1.1e-80 Smith-Waterman score: 1230; 99.5% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: NP_066 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE2 LQKRLRRKD ::::::::: NP_066 LQKRLRRKD >>NP_067091 (OMIM: 147583) interferon alpha-17 precursor (189 aa) initn: 1182 init1: 1182 opt: 1182 Z-score: 1508.9 bits: 285.9 E(85289): 2.6e-77 Smith-Waterman score: 1182; 96.3% identity (98.9% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: NP_067 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .:.:::::.::::::::::::::::::::::::::::::::::::::::::::::::.:: NP_067 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: NP_067 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE2 LQKRLRRKD ::: ::::: NP_067 LQKILRRKD >>NP_002162 (OMIM: 147577) interferon alpha-10 precursor (189 aa) initn: 1172 init1: 1172 opt: 1172 Z-score: 1496.3 bits: 283.6 E(85289): 1.3e-76 Smith-Waterman score: 1172; 95.2% identity (98.4% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::.:::::: :::::::::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .:.:::::.::::.:::::::::::::::::::::::::::::::::::::::::::::: NP_002 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::::::::::::: :.::::::::::::::::::::::: NP_002 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE2 LQKRLRRKD ::::::::: NP_002 LQKRLRRKD >>NP_066401 (OMIM: 147567) interferon alpha-7 precursor (189 aa) initn: 1149 init1: 1149 opt: 1149 Z-score: 1467.1 bits: 278.2 E(85289): 5.6e-75 Smith-Waterman score: 1149; 94.2% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG :: ::::::.:::::::::::::::::::::: ::::::::::::::: ::::::::.: NP_066 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::: ::::::::::::::: :::::::::::::::::::.::::: NP_066 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE2 LQKRLRRKD :.: ::::: NP_066 LKKGLRRKD >>NP_002166 (OMIM: 147584) interferon alpha-21 precursor (189 aa) initn: 1165 init1: 1130 opt: 1130 Z-score: 1443.0 bits: 273.7 E(85289): 1.2e-73 Smith-Waterman score: 1130; 91.5% identity (97.4% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.:::::.::::.:::::::::::::::::::.::::.::::::::::::: ::::::: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::: ::::::.::::::::::::::::::::::::::::::.:.: NP_002 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 130 140 150 160 170 180 pF1KE2 LQKRLRRKD .:.:::::. NP_002 FQERLRRKE >>NP_002164 (OMIM: 147580) interferon alpha-16 precursor (189 aa) initn: 1101 init1: 1101 opt: 1101 Z-score: 1406.2 bits: 266.9 E(85289): 1.4e-71 Smith-Waterman score: 1101; 88.4% identity (95.2% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.: :::.::::.::::..:::::::::::::.::::::...::.:: ::.::::::: NP_002 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::: ::::::: ::::::::::::::::::::: ::::::::::::::::::.::::: NP_002 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE2 LQKRLRRKD ::: ::::: NP_002 LQKGLRRKD >>NP_002160 (OMIM: 147565) interferon alpha-5 precursor (189 aa) initn: 1078 init1: 1063 opt: 1063 Z-score: 1358.0 bits: 258.0 E(85289): 6.7e-69 Smith-Waterman score: 1063; 83.1% identity (96.8% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG ::: : ::::..::. ::::::::::::::::.:::.:...::::::: ::::::::::: NP_002 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.:::::.::::.:::::::::::::::::::.::::.:...::.:: ::::::::::: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::..::::::.::::: ::::.::::::::::::::::::::::::::::::::.:.:.: NP_002 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 pF1KE2 LQKRLRRKD ::.:::::. NP_002 LQERLRRKE >>NP_002163 (OMIM: 147579) interferon alpha-14 precursor (189 aa) initn: 1054 init1: 1054 opt: 1054 Z-score: 1346.5 bits: 255.9 E(85289): 2.9e-68 Smith-Waterman score: 1054; 83.6% identity (94.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG ::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: ::: :::::::::: NP_002 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.:::::.::::.:::::::::.:::::::::..:::::...::::: ::.::.:::: NP_002 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::.:::::::::: ::::::::::::::::::::::::: NP_002 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE2 LQKRLRRKD ::::::::: NP_002 LQKRLRRKD >>NP_000596 (OMIM: 147562) interferon alpha-2 precursor (188 aa) initn: 1006 init1: 644 opt: 1002 Z-score: 1280.6 bits: 243.6 E(85289): 1.4e-64 Smith-Waterman score: 1002; 81.0% identity (93.1% similar) in 189 aa overlap (1-189:1-188) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG :::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: ::::::::::: NP_000 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.::: :.::::...: :::::::: ::::::.::::::...::.:: ::::::::::: NP_000 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::::: ::: :::::.:::::::::::::::::: :::::::::::::::::::.:.::: NP_000 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 120 130 140 150 160 170 pF1KE2 LQKRLRRKD ::. :: :. NP_000 LQESLRSKE 180 >>NP_066282 (OMIM: 147566) interferon alpha-6 precursor (189 aa) initn: 1017 init1: 1002 opt: 1002 Z-score: 1280.6 bits: 243.7 E(85289): 1.4e-64 Smith-Waterman score: 1002; 81.0% identity (92.6% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG ::: :.::::..::: :: ::: ::::::::::.::...::::: ::: :::::::::: NP_066 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.:::::.::::..:::::::.::::::::::.:::.::.. ::.:. ::::::::::: NP_066 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN :::.::: : :::::::::::::::::::::::::::::::::::::::::::.: : : NP_066 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 130 140 150 160 170 180 pF1KE2 LQKRLRRKD ::.:::::. NP_066 LQERLRRKE 189 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:49:47 2016 done: Sun Nov 6 15:49:48 2016 Total Scan time: 4.700 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]