FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1674, 189 aa 1>>>pF1KE1674 189 - 189 aa - 189 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0699+/-0.000392; mu= 14.3805+/- 0.024 mean_var=65.3920+/-12.929, 0's: 0 Z-trim(112.3): 17 B-trim: 208 in 1/49 Lambda= 0.158603 statistics sampled from 21171 (21188) to 21171 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.248), width: 16 Scan time: 4.880 The best scores are: opt bits E(85289) NP_002166 (OMIM: 147584) interferon alpha-21 precu ( 189) 1230 290.0 1.5e-78 NP_066546 (OMIM: 147564) interferon alpha-4 precur ( 189) 1135 268.3 5.2e-72 NP_067091 (OMIM: 147583) interferon alpha-17 precu ( 189) 1125 266.0 2.5e-71 NP_002162 (OMIM: 147577) interferon alpha-10 precu ( 189) 1125 266.0 2.5e-71 NP_002160 (OMIM: 147565) interferon alpha-5 precur ( 189) 1100 260.3 1.3e-69 NP_066401 (OMIM: 147567) interferon alpha-7 precur ( 189) 1079 255.5 3.8e-68 NP_002164 (OMIM: 147580) interferon alpha-16 precu ( 189) 1053 249.5 2.3e-66 NP_002163 (OMIM: 147579) interferon alpha-14 precu ( 189) 1026 243.4 1.7e-64 NP_008831 (OMIM: 147578) interferon alpha-1/13 pre ( 190) 1006 238.8 4e-63 NP_076918 (OMIM: 147660) interferon alpha-1/13 pre ( 189) 1001 237.6 8.9e-63 NP_066282 (OMIM: 147566) interferon alpha-6 precur ( 189) 1000 237.4 1e-62 NP_002161 (OMIM: 147568) interferon alpha-8 precur ( 189) 996 236.5 2e-62 NP_000596 (OMIM: 147562) interferon alpha-2 precur ( 188) 994 236.0 2.7e-62 NP_002168 (OMIM: 147553) interferon omega-1 precur ( 195) 692 166.9 1.7e-41 NP_795372 (OMIM: 615223) interferon epsilon precur ( 208) 342 86.9 2.4e-17 NP_002167 (OMIM: 147640) interferon beta precursor ( 187) 310 79.5 3.5e-15 NP_064509 (OMIM: 615326) interferon kappa precurso ( 207) 164 46.1 4.3e-05 >>NP_002166 (OMIM: 147584) interferon alpha-21 precursor (189 aa) initn: 1230 init1: 1230 opt: 1230 Z-score: 1531.3 bits: 290.0 E(85289): 1.5e-78 Smith-Waterman score: 1230; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 130 140 150 160 170 180 pF1KE1 FQERLRRKE ::::::::: NP_002 FQERLRRKE >>NP_066546 (OMIM: 147564) interferon alpha-4 precursor (189 aa) initn: 1164 init1: 1135 opt: 1135 Z-score: 1413.8 bits: 268.3 E(85289): 5.2e-72 Smith-Waterman score: 1135; 92.1% identity (97.4% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: NP_066 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE ::.:::::.::::::::::::::::::::::::.::::.::::::::::::: ::::::: NP_066 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI :::::::::::::::: ::::::.::::::::::::::::::::::::::::::.:.: NP_066 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 FQERLRRKE .:.:::::. NP_066 LQKRLRRKD >>NP_067091 (OMIM: 147583) interferon alpha-17 precursor (189 aa) initn: 1170 init1: 1125 opt: 1125 Z-score: 1401.4 bits: 266.0 E(85289): 2.5e-71 Smith-Waterman score: 1125; 91.0% identity (97.4% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_067 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE .::::::::::::.:::::::::::::::::::.::::.::::::::::::: ::::.:: NP_067 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI ::::::::.::::::: ::::::.::::::::::::::::::::::::::::::.:.: NP_067 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 FQERLRRKE .:. ::::. NP_067 LQKILRRKD >>NP_002162 (OMIM: 147577) interferon alpha-10 precursor (189 aa) initn: 1154 init1: 1125 opt: 1125 Z-score: 1401.4 bits: 266.0 E(85289): 2.5e-71 Smith-Waterman score: 1125; 91.0% identity (96.8% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE .::::::::::::::::::::::::::::::::.::::.::::::::::::: ::::::: NP_002 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI :::::::::::::::: ::::::.:::::::::: :.:::::::::::::::::.:.: NP_002 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 FQERLRRKE .:.:::::. NP_002 LQKRLRRKD >>NP_002160 (OMIM: 147565) interferon alpha-5 precursor (189 aa) initn: 1100 init1: 1100 opt: 1100 Z-score: 1370.5 bits: 260.3 E(85289): 1.3e-69 Smith-Waterman score: 1100; 86.8% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG ::: : ::::..::. ::::::::::::::::.:::.:...::::::::::::::::::: NP_002 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE ::::::::::::::::::::::::::::::::::::::::...::.:: ::: ::::::: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI ::..::::::.::::::::::.:.:::::::::::::::::::::::::::::::::: NP_002 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 pF1KE1 FQERLRRKE .:::::::: NP_002 LQERLRRKE >>NP_066401 (OMIM: 147567) interferon alpha-7 precursor (189 aa) initn: 1113 init1: 1079 opt: 1079 Z-score: 1344.5 bits: 255.5 E(85289): 3.8e-68 Smith-Waterman score: 1079; 87.8% identity (94.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :: ::::::.:::::::::::::::::::::: ::::::::::::::::::::::::.: NP_066 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE ::.:::::.::::.:::::::::::::::::::.::::.::::::::::::: ::::::: NP_066 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI :::::::::::::::: : ::::.:::::::::: :::::::::::::::::::::.: NP_066 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE1 FQERLRRKE ... ::::. NP_066 LKKGLRRKD >>NP_002164 (OMIM: 147580) interferon alpha-16 precursor (189 aa) initn: 1074 init1: 1053 opt: 1053 Z-score: 1312.4 bits: 249.5 E(85289): 2.3e-66 Smith-Waterman score: 1053; 85.7% identity (92.6% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::: :::::::.::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE :::: :::::::::::::..::::::::::::::::::.:...::.:: :: ::::::: NP_002 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI ::: ::::::: ::: ::::::.:::::::::: ::::::::::::::::::::.: NP_002 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE1 FQERLRRKE .:. ::::. NP_002 LQKGLRRKD >>NP_002163 (OMIM: 147579) interferon alpha-14 precursor (189 aa) initn: 1046 init1: 1026 opt: 1026 Z-score: 1279.0 bits: 243.4 E(85289): 1.7e-64 Smith-Waterman score: 1026; 82.0% identity (93.1% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG ::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: :::::::::::::: NP_002 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE :::::::::::::::::::::::.::::::::::.:::.:...::::: :: ::.:::: NP_002 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI :::::::::::::::: ::::::::::::::::: :::::::::::::::::::.:.: NP_002 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 FQERLRRKE .:.:::::. NP_002 LQKRLRRKD >>NP_008831 (OMIM: 147578) interferon alpha-1/13 precurs (190 aa) initn: 1006 init1: 1006 opt: 1006 Z-score: 1254.2 bits: 238.8 E(85289): 4e-63 Smith-Waterman score: 1006; 81.5% identity (91.5% similar) in 189 aa overlap (1-189:2-190) 10 20 30 40 50 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDF :: :.::::..::: :: ::::::::.:::: :::.:.:::::.:::: ::: ::::: NP_008 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 GFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDL ::::::::::::::: :::::::.::: ::::.::::::.:...::.:: ::: :::::: NP_008 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 EACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSK ::::.:: : ::::::.::::::::::.::::::::::::::::::::::::::.::: NP_008 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST 130 140 150 160 170 180 180 pF1KE1 IFQERLRRKE .:::::::: NP_008 NLQERLRRKE 190 >>NP_076918 (OMIM: 147660) interferon alpha-1/13 precurs (189 aa) initn: 1001 init1: 1001 opt: 1001 Z-score: 1248.1 bits: 237.6 E(85289): 8.9e-63 Smith-Waterman score: 1001; 81.0% identity (91.5% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :: :.:::...::: :: ::::::::.:::: :::.:.:::::.:::: ::: :::::: NP_076 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE :::::::::::::: :::::::.::: ::::.::::::.:...::.:: ::: ::::::: NP_076 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI :::.:: : ::::::.::::::::::.::::::::::::::::::::::::::.::: NP_076 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 130 140 150 160 170 180 pF1KE1 FQERLRRKE .:::::::: NP_076 LQERLRRKE 189 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:50:17 2016 done: Sun Nov 6 15:50:17 2016 Total Scan time: 4.880 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]