Result of FASTA (ccds) for
pFN21AE1674
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1674, 189 aa
1>>>pF1KE1674 189 - 189 aa - 189 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5335+/-0.000869; mu= 11.5603+/- 0.052
mean_var=61.9012+/-12.338, 0's: 0 Z-trim(105.6): 20 B-trim: 0 in 0/48
Lambda= 0.163014
statistics sampled from 8504 (8523) to 8504 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.262), width: 16
Scan time: 1.540
The best scores are: opt bits E(32554)
CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1230 297.6 3e-81
CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 1135 275.3 1.6e-74
CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 1125 272.9 8.1e-74
CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 1125 272.9 8.1e-74
CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1100 267.0 4.7e-72
CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 1079 262.1 1.5e-70
CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 1053 256.0 1e-68
CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1026 249.6 8.2e-67
CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 1006 244.9 2.2e-65
CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 1001 243.8 4.8e-65
CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 1000 243.5 5.7e-65
CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 996 242.6 1.1e-64
CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 994 242.1 1.5e-64
CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 692 171.1 3.7e-43
CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 342 88.8 2.4e-18
CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 310 81.3 4e-16
>>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa)
initn: 1230 init1: 1230 opt: 1230 Z-score: 1572.2 bits: 297.6 E(32554): 3e-81
Smith-Waterman score: 1230; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
130 140 150 160 170 180
pF1KE1 FQERLRRKE
:::::::::
CCDS64 FQERLRRKE
>>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa)
initn: 1164 init1: 1135 opt: 1135 Z-score: 1451.5 bits: 275.3 E(32554): 1.6e-74
Smith-Waterman score: 1135; 92.1% identity (97.4% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
::.:::::.::::::::::::::::::::::::.::::.::::::::::::: :::::::
CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
:::::::::::::::: ::::::.::::::::::::::::::::::::::::::.:.:
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 FQERLRRKE
.:.:::::.
CCDS64 LQKRLRRKD
>>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa)
initn: 1154 init1: 1125 opt: 1125 Z-score: 1438.8 bits: 272.9 E(32554): 8.1e-74
Smith-Waterman score: 1125; 91.0% identity (96.8% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
:::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
.::::::::::::::::::::::::::::::::.::::.::::::::::::: :::::::
CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
:::::::::::::::: ::::::.:::::::::: :.:::::::::::::::::.:.:
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 FQERLRRKE
.:.:::::.
CCDS64 LQKRLRRKD
>>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa)
initn: 1170 init1: 1125 opt: 1125 Z-score: 1438.8 bits: 272.9 E(32554): 8.1e-74
Smith-Waterman score: 1125; 91.0% identity (97.4% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
.::::::::::::.:::::::::::::::::::.::::.::::::::::::: ::::.::
CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
::::::::.::::::: ::::::.::::::::::::::::::::::::::::::.:.:
CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 FQERLRRKE
.:. ::::.
CCDS65 LQKILRRKD
>>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa)
initn: 1100 init1: 1100 opt: 1100 Z-score: 1407.0 bits: 267.0 E(32554): 4.7e-72
Smith-Waterman score: 1100; 86.8% identity (96.3% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
::: : ::::..::. ::::::::::::::::.:::.:...:::::::::::::::::::
CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
::::::::::::::::::::::::::::::::::::::::...::.:: ::: :::::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
::..::::::.::::::::::.:.::::::::::::::::::::::::::::::::::
CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
130 140 150 160 170 180
pF1KE1 FQERLRRKE
.::::::::
CCDS65 LQERLRRKE
>>CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 (189 aa)
initn: 1113 init1: 1079 opt: 1079 Z-score: 1380.3 bits: 262.1 E(32554): 1.5e-70
Smith-Waterman score: 1079; 87.8% identity (94.7% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
:: ::::::.:::::::::::::::::::::: ::::::::::::::::::::::::.:
CCDS34 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
::.:::::.::::.:::::::::::::::::::.::::.::::::::::::: :::::::
CCDS34 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
:::::::::::::::: : ::::.:::::::::: :::::::::::::::::::::.:
CCDS34 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
130 140 150 160 170 180
pF1KE1 FQERLRRKE
... ::::.
CCDS34 LKKGLRRKD
>>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 (189 aa)
initn: 1074 init1: 1053 opt: 1053 Z-score: 1347.3 bits: 256.0 E(32554): 1e-68
Smith-Waterman score: 1053; 85.7% identity (92.6% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::.:::
CCDS34 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
:::: :::::::::::::..::::::::::::::::::.:...::.:: :: :::::::
CCDS34 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
::: ::::::: ::: ::::::.:::::::::: ::::::::::::::::::::.:
CCDS34 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
130 140 150 160 170 180
pF1KE1 FQERLRRKE
.:. ::::.
CCDS34 LQKGLRRKD
>>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa)
initn: 1046 init1: 1026 opt: 1026 Z-score: 1313.0 bits: 249.6 E(32554): 8.2e-67
Smith-Waterman score: 1026; 82.0% identity (93.1% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: ::::::::::::::
CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
:::::::::::::::::::::::.::::::::::.:::.:...::::: :: ::.::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
:::::::::::::::: ::::::::::::::::: :::::::::::::::::::.:.:
CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 FQERLRRKE
.:.:::::.
CCDS65 LQKRLRRKD
>>CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 (190 aa)
initn: 1006 init1: 1006 opt: 1006 Z-score: 1287.5 bits: 244.9 E(32554): 2.2e-65
Smith-Waterman score: 1006; 81.5% identity (91.5% similar) in 189 aa overlap (1-189:2-190)
10 20 30 40 50
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDF
:: :.::::..::: :: ::::::::.:::: :::.:.:::::.:::: ::: :::::
CCDS65 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 GFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDL
::::::::::::::: :::::::.::: ::::.::::::.:...::.:: ::: ::::::
CCDS65 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 EACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSK
::::.:: : ::::::.::::::::::.::::::::::::::::::::::::::.:::
CCDS65 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
130 140 150 160 170 180
180
pF1KE1 IFQERLRRKE
.::::::::
CCDS65 NLQERLRRKE
190
>>CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 (189 aa)
initn: 1001 init1: 1001 opt: 1001 Z-score: 1281.2 bits: 243.8 E(32554): 4.8e-65
Smith-Waterman score: 1001; 81.0% identity (91.5% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
:: :.:::...::: :: ::::::::.:::: :::.:.:::::.:::: ::: ::::::
CCDS65 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
:::::::::::::: :::::::.::: ::::.::::::.:...::.:: ::: :::::::
CCDS65 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
:::.:: : ::::::.::::::::::.::::::::::::::::::::::::::.:::
CCDS65 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
130 140 150 160 170 180
pF1KE1 FQERLRRKE
.::::::::
CCDS65 LQERLRRKE
189 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 15:50:16 2016 done: Sun Nov 6 15:50:16 2016
Total Scan time: 1.540 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]