FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5329, 273 aa 1>>>pF1KE5329 273 - 273 aa - 273 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9148+/-0.000926; mu= 11.9320+/- 0.055 mean_var=90.4605+/-17.845, 0's: 0 Z-trim(107.0): 67 B-trim: 2 in 1/51 Lambda= 0.134848 statistics sampled from 9254 (9321) to 9254 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.286), width: 16 Scan time: 2.090 The best scores are: opt bits E(32554) CCDS6465.1 PDCD1LG2 gene_id:80380|Hs108|chr9 ( 273) 1786 357.5 5.8e-99 CCDS6464.1 CD274 gene_id:29126|Hs108|chr9 ( 290) 370 82.0 5.2e-16 >>CCDS6465.1 PDCD1LG2 gene_id:80380|Hs108|chr9 (273 aa) initn: 1786 init1: 1786 opt: 1786 Z-score: 1890.1 bits: 357.5 E(32554): 5.8e-99 Smith-Waterman score: 1786; 99.6% identity (99.6% similar) in 273 aa overlap (1-273:1-273) 10 20 30 40 50 60 pF1KE5 MIFLLLMLSLELQLHQIAALFTVTVPKELYIIEHGSNVTLECNFDTGSHVNLGAITASLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 MIFLLLMLSLELQLHQIAALFTVTVPKELYIIEHGSNVTLECNFDTGSHVNLGAITASLQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 KVENDTSPHRERATLLEEQLPLGKASFHIPQVQVRDEGQYQCIIIYGVAWDYKYLTLKVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 KVENDTSPHRERATLLEEQLPLGKASFHIPQVQVRDEGQYQCIIIYGVAWDYKYLTLKVK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 ASYRKINTHILKVPETDEVELTCQATGYPLAEVSWPNVSVPANTSHSRTPEGLYQVTSVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 ASYRKINTHILKVPETDEVELTCQATGYPLAEVSWPNVSVPANTSHSRTPEGLYQVTSVL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 RLKPPPGRNFSCVFWNTHVRELTLASIDLQSQMEPRTHPTWLLHIFIPSCIIAFIFIATV :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: CCDS64 RLKPPPGRNFSCVFWNTHVRELTLASIDLQSQMEPRTHPTWLLHIFIPFCIIAFIFIATV 190 200 210 220 230 240 250 260 270 pF1KE5 IALRKQLCQKLYSSKDTTKRPVTTTKREVNSAI ::::::::::::::::::::::::::::::::: CCDS64 IALRKQLCQKLYSSKDTTKRPVTTTKREVNSAI 250 260 270 >>CCDS6464.1 CD274 gene_id:29126|Hs108|chr9 (290 aa) initn: 362 init1: 208 opt: 370 Z-score: 401.0 bits: 82.0 E(32554): 5.2e-16 Smith-Waterman score: 494; 39.0% identity (65.6% similar) in 282 aa overlap (15-268:14-288) 10 20 30 40 50 pF1KE5 MIFLLLMLSLELQLHQIAALFTVTVPKELYIIEHGSNVTLECNFDTGSHVNLGAITAS-- : . : :::::::.::..:.:::.:.::.: . ....:.:. . CCDS64 MRIFAVFIFMTYWHLLNA-FTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWE 10 20 30 40 50 60 70 80 90 100 pF1KE5 ------LQKV--ENDT----SPHRERATLLEEQLPLGKASFHIPQVQVRDEGQYQCIIIY .: : :.: : .:.:: ::..:: ::.:...: .:...: : :.:.: : CCDS64 MEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE5 GVAWDYKYLTLKVKASYRKINTHILKV-PETDEVELTCQATGYPLAEVSWPN-----VSV : : ::: .:.::.: : ::: .:: : : :.: :::::: ::: ::: : . .: CCDS64 GGA-DYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSG 120 130 140 150 160 170 170 180 190 200 210 pF1KE5 PANTSHSRTPEGLYQVTSVLRLKPPPGRNFSCVFW-----NTHVRELTLASIDLQSQMEP ..:..:. : :..:::.::.. .. : :.: ..:. ::.. . : . CCDS64 KTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNE 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE5 RTHPTWLLHIFIPSCI-IAFIFIATVIALRK--QLCQKLYSSKDTTKRPVTTTKREVNSA ::: . : :.. :. .:. :: . ::: .. : . .::... . :. : CCDS64 RTHLVILGAILL--CLGVALTFI---FRLRKGRMMDVKKCGIQDTNSKKQSDTHLEET 240 250 260 270 280 290 pF1KE5 I 273 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:49:38 2016 done: Mon Nov 7 23:49:38 2016 Total Scan time: 2.090 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]