Result of FASTA (omim) for pFN21AE5237
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5237, 251 aa
  1>>>pF1KE5237 251 - 251 aa - 251 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7393+/-0.000386; mu= 17.6974+/- 0.024
 mean_var=61.6225+/-13.309, 0's: 0 Z-trim(113.1): 24  B-trim: 1044 in 1/49
 Lambda= 0.163382
 statistics sampled from 22311 (22335) to 22311 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.262), width:  16
 Scan time:  4.270

The best scores are:                                      opt bits E(85289)
NP_077271 (OMIM: 608813) derlin-1 isoform a [Homo  ( 251) 1774 426.5 2.2e-119
NP_001128143 (OMIM: 608813) derlin-1 isoform b [Ho ( 231) 1209 293.3 2.5e-79
XP_006716720 (OMIM: 608813) PREDICTED: derlin-1 is ( 151) 1075 261.6 5.8e-70
NP_001317530 (OMIM: 608813) derlin-1 isoform c [Ho ( 151) 1075 261.6 5.8e-70
XP_011528808 (OMIM: 610305) PREDICTED: derlin-3 is ( 233)  502 126.7 3.7e-29
NP_940842 (OMIM: 610305) derlin-3 isoform 3 [Homo  ( 205)  493 124.5 1.5e-28
NP_001002862 (OMIM: 610305) derlin-3 isoform 2 [Ho ( 235)  493 124.5 1.6e-28
NP_001129223 (OMIM: 610305) derlin-3 isoform 1 [Ho ( 239)  493 124.6 1.6e-28
NP_057125 (OMIM: 610304) derlin-2 isoform a [Homo  ( 239)  487 123.1 4.4e-28
XP_011528807 (OMIM: 610305) PREDICTED: derlin-3 is ( 234)  484 122.4   7e-28
NP_001291706 (OMIM: 610304) derlin-2 isoform b [Ho ( 238)  478 121.0 1.9e-27
XP_016884570 (OMIM: 610305) PREDICTED: derlin-3 is ( 249)  401 102.9 5.7e-22
XP_016884571 (OMIM: 610305) PREDICTED: derlin-3 is ( 165)  341 88.6 7.5e-18
XP_016884567 (OMIM: 610305) PREDICTED: derlin-3 is ( 299)  265 70.9 2.9e-12
XP_016884568 (OMIM: 610305) PREDICTED: derlin-3 is ( 298)  256 68.8 1.3e-11
XP_016884569 (OMIM: 610305) PREDICTED: derlin-3 is ( 279)  184 51.8 1.6e-06


>>NP_077271 (OMIM: 608813) derlin-1 isoform a [Homo sapi  (251 aa)
 initn: 1774 init1: 1774 opt: 1774  Z-score: 2264.4  bits: 426.5 E(85289): 2.2e-119
Smith-Waterman score: 1774; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251)

               10        20        30        40        50        60
pF1KE5 MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 YFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 YFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 LMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 HLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 HLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRH
              190       200       210       220       230       240

              250 
pF1KE5 NWGQGFRLGDQ
       :::::::::::
NP_077 NWGQGFRLGDQ
              250 

>>NP_001128143 (OMIM: 608813) derlin-1 isoform b [Homo s  (231 aa)
 initn: 1208 init1: 1208 opt: 1209  Z-score: 1545.2  bits: 293.3 E(85289): 2.5e-79
Smith-Waterman score: 1592; 92.0% identity (92.0% similar) in 251 aa overlap (1-251:1-231)

               10        20        30        40        50        60
pF1KE5 MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 YFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVG
       :::::::::::::::::::::::::::::::::::::::::::::::::           
NP_001 LMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGS-----------
              130       140       150       160                    

              190       200       210       220       230       240
pF1KE5 HLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRH
                :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ---------YPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRH
              170       180       190       200       210       220

              250 
pF1KE5 NWGQGFRLGDQ
       :::::::::::
NP_001 NWGQGFRLGDQ
              230 

>>XP_006716720 (OMIM: 608813) PREDICTED: derlin-1 isofor  (151 aa)
 initn: 1075 init1: 1075 opt: 1075  Z-score: 1377.0  bits: 261.6 E(85289): 5.8e-70
Smith-Waterman score: 1075; 100.0% identity (100.0% similar) in 151 aa overlap (101-251:1-151)

               80        90       100       110       120       130
pF1KE5 LYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIMSVL
                                     ::::::::::::::::::::::::::::::
XP_006                               MLLFNWICIVITGLAMDMQLLMIPLIMSVL
                                             10        20        30

              140       150       160       170       180       190
pF1KE5 YVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRY
               40        50        60        70        80        90

              200       210       220       230       240       250
pF1KE5 PMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD
              100       110       120       130       140       150

        
pF1KE5 Q
       :
XP_006 Q
        

>>NP_001317530 (OMIM: 608813) derlin-1 isoform c [Homo s  (151 aa)
 initn: 1075 init1: 1075 opt: 1075  Z-score: 1377.0  bits: 261.6 E(85289): 5.8e-70
Smith-Waterman score: 1075; 100.0% identity (100.0% similar) in 151 aa overlap (101-251:1-151)

               80        90       100       110       120       130
pF1KE5 LYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIMSVL
                                     ::::::::::::::::::::::::::::::
NP_001                               MLLFNWICIVITGLAMDMQLLMIPLIMSVL
                                             10        20        30

              140       150       160       170       180       190
pF1KE5 YVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRY
               40        50        60        70        80        90

              200       210       220       230       240       250
pF1KE5 PMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD
              100       110       120       130       140       150

        
pF1KE5 Q
       :
NP_001 Q
        

>>XP_011528808 (OMIM: 610305) PREDICTED: derlin-3 isofor  (233 aa)
 initn: 479 init1: 365 opt: 502  Z-score: 644.5  bits: 126.7 E(85289): 3.7e-29
Smith-Waterman score: 502; 35.8% identity (66.5% similar) in 215 aa overlap (8-219:10-221)

                 10        20        30        40        50        
pF1KE5   MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITA
                : ..::.:: . :: : .  . .: :.::  :.. :.  . .::.:: .: 
XP_011 MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KE5 TFYFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDM
        ..:  ::  :: .. :. :...:   :: :.: :: ::..::.::. . ... ::  ..
XP_011 FLFF--GP-LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL
                  70        80        90       100       110       

      120       130       140       150       160       170        
pF1KE5 QLLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNL
        .:   :.  ..:::.. .  . :.:.    :.: .:::...::. ..:.:.. .:.:  
XP_011 FFLGQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIA
       120       130       140       150       160       170       

      180       190       200          210       220       230     
pF1KE5 VGHLYFFLMFRYPMDLGGRNFLSTPQFLY---RWLPSRRGGVSGFGVPPASMRRAADQNG
       :::.:.::   .: . ::. .:.:: ::    .  : : :  .:                
XP_011 VGHIYYFLEDVFPNQPGGKRLLQTPGFLLATAQQCPHRTGPSAGDFRAARPQLAVA    
       180       190       200       210       220       230       

         240       250 
pF1KE5 GGGRHNWGQGFRLGDQ

>>NP_940842 (OMIM: 610305) derlin-3 isoform 3 [Homo sapi  (205 aa)
 initn: 479 init1: 365 opt: 493  Z-score: 633.8  bits: 124.5 E(85289): 1.5e-28
Smith-Waterman score: 493; 36.7% identity (68.8% similar) in 199 aa overlap (8-206:10-205)

                 10        20        30        40        50        
pF1KE5   MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITA
                : ..::.:: . :: : .  . .: :.::  :.. :.  . .::.:: .: 
NP_940 MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KE5 TFYFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDM
        ..:  ::  :: .. :. :...:   :: :.: :: ::..::.::. . ... ::  ..
NP_940 FLFF--GP-LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL
                  70        80        90       100       110       

      120       130       140       150       160       170        
pF1KE5 QLLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNL
        .:   :.  ..:::.. .  . :.:.    :.: .:::...::. ..:.:.. .:.:  
NP_940 FFLGQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIA
       120       130       140       150       160       170       

      180       190       200       210       220       230        
pF1KE5 VGHLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGG
       :::.:.::   .: . ::. .:.:: ::                                
NP_940 VGHIYYFLEDVFPNQPGGKRLLQTPGFL                                
       180       190       200                                     

>>NP_001002862 (OMIM: 610305) derlin-3 isoform 2 [Homo s  (235 aa)
 initn: 479 init1: 365 opt: 493  Z-score: 633.0  bits: 124.5 E(85289): 1.6e-28
Smith-Waterman score: 493; 36.7% identity (68.8% similar) in 199 aa overlap (8-206:10-205)

                 10        20        30        40        50        
pF1KE5   MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITA
                : ..::.:: . :: : .  . .: :.::  :.. :.  . .::.:: .: 
NP_001 MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KE5 TFYFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDM
        ..:  ::  :: .. :. :...:   :: :.: :: ::..::.::. . ... ::  ..
NP_001 FLFF--GP-LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL
                  70        80        90       100       110       

      120       130       140       150       160       170        
pF1KE5 QLLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNL
        .:   :.  ..:::.. .  . :.:.    :.: .:::...::. ..:.:.. .:.:  
NP_001 FFLGQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIA
       120       130       140       150       160       170       

      180       190       200       210       220       230        
pF1KE5 VGHLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGG
       :::.:.::   .: . ::. .:.:: ::                                
NP_001 VGHIYYFLEDVFPNQPGGKRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPGPHLPPPQQ  
       180       190       200       210       220       230       

>>NP_001129223 (OMIM: 610305) derlin-3 isoform 1 [Homo s  (239 aa)
 initn: 479 init1: 365 opt: 493  Z-score: 632.9  bits: 124.6 E(85289): 1.6e-28
Smith-Waterman score: 495; 33.8% identity (64.6% similar) in 237 aa overlap (8-244:10-234)

                 10        20        30        40        50        
pF1KE5   MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITA
                : ..::.:: . :: : .  . .: :.::  :.. :.  . .::.:: .: 
NP_001 MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KE5 TFYFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDM
        ..:  ::  :: .. :. :...:   :: :.: :: ::..::.::. . ... ::  ..
NP_001 FLFF--GP-LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL
                  70        80        90       100       110       

      120       130       140       150       160       170        
pF1KE5 QLLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNL
        .:   :.  ..:::.. .  . :.:.    :.: .:::...::. ..:.:.. .:.:  
NP_001 FFLGQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIA
       120       130       140       150       160       170       

      180       190       200       210       220       230        
pF1KE5 VGHLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGG
       :::.:.::   .: . ::. .:.:: ::         :...  .: .:      :.. ::
NP_001 VGHIYYFLEDVFPNQPGGKRLLQTPGFL---------GLQSSKAPAGSSLTIWTQQSQGG
       180       190       200                210       220        

      240       250 
pF1KE5 RHNWGQGFRLGDQ
         . :.       
NP_001 PGTAGELAAPS  
      230           

>>NP_057125 (OMIM: 610304) derlin-2 isoform a [Homo sapi  (239 aa)
 initn: 516 init1: 370 opt: 487  Z-score: 625.2  bits: 123.1 E(85289): 4.4e-28
Smith-Waterman score: 499; 35.5% identity (63.2% similar) in 242 aa overlap (8-249:10-238)

                 10        20        30        40        50        
pF1KE5   MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITA
                . .:: ..: . .: : .  . .: ::.:  :.. :: .. .::::: :: 
NP_057 MAYQSLRLEYLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITN
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KE5 TFYFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDM
        ..:  :: .:: .: :. :::.:   :: :.: :: ::..::.::. . ... :: ...
NP_057 FLFF--GP-VGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSL
                  70        80        90       100       110       

      120       130       140       150       160       170        
pF1KE5 QLLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNL
        .:   . . ..:::.. :  . ..:.    :.: .::::..::. ..:.:.: .:.:  
NP_057 VFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIA
       120       130       140       150       160       170       

      180       190       200       210       220       230        
pF1KE5 VGHLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGG
       :::.::::   .: . ::  .:.::..:           . : .:  .       .   :
NP_057 VGHIYFFLEDVFPNQPGGIRILKTPSILK----------AIFDTPDEDPNYNPLPEERPG
       180       190       200                 210       220       

      240       250 
pF1KE5 RHNWGQGFRLGDQ
          ::.: :::  
NP_057 GFAWGEGQRLGG 
       230          

>>XP_011528807 (OMIM: 610305) PREDICTED: derlin-3 isofor  (234 aa)
 initn: 463 init1: 365 opt: 484  Z-score: 621.5  bits: 122.4 E(85289): 7e-28
Smith-Waterman score: 484; 36.7% identity (68.8% similar) in 199 aa overlap (8-206:10-204)

                 10        20        30        40        50        
pF1KE5   MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITA
                : ..::.:: . :: : .  .. : :.::  :.. :.  . .::.:: .: 
XP_011 MAWQGLAAEFLQVPAVTRAYTAACV-LTTAAVLELLSPFQLYFNPHLVFRKFQVWRLVTN
               10        20         30        40        50         

       60        70        80        90       100       110        
pF1KE5 TFYFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDM
        ..:  ::  :: .. :. :...:   :: :.: :: ::..::.::. . ... ::  ..
XP_011 FLFF--GP-LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL
      60           70        80        90       100       110      

      120       130       140       150       160       170        
pF1KE5 QLLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNL
        .:   :.  ..:::.. .  . :.:.    :.: .:::...::. ..:.:.. .:.:  
XP_011 FFLGQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIA
        120       130       140       150       160       170      

      180       190       200       210       220       230        
pF1KE5 VGHLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGG
       :::.:.::   .: . ::. .:.:: ::                                
XP_011 VGHIYYFLEDVFPNQPGGKRLLQTPGFLKLLLDAPAEDPNYLPLPEEQPGPHLPPPQQ  
        180       190       200       210       220       230      




251 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:46:54 2016 done: Mon Nov  7 22:46:55 2016
 Total Scan time:  4.270 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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