FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5453, 352 aa
  1>>>pF1KE5453 352 - 352 aa - 352 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7485+/-0.00082; mu= 11.2218+/- 0.050
 mean_var=116.1258+/-23.252, 0's: 0 Z-trim(111.5): 14  B-trim: 134 in 1/50
 Lambda= 0.119017
 statistics sampled from 12440 (12446) to 12440 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.382), width:  16
 Scan time:  1.730

The best scores are:                                      opt bits E(32554)
CCDS6319.1 EIF3H gene_id:8667|Hs108|chr8           ( 352) 2305 406.2 2.1e-113


>>CCDS6319.1 EIF3H gene_id:8667|Hs108|chr8                (352 aa)
 initn: 2305 init1: 2305 opt: 2305  Z-score: 2149.3  bits: 406.2 E(32554): 2.1e-113
Smith-Waterman score: 2305; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)

               10        20        30        40        50        60
pF1KE5 MASRKEGTGSTATSSSSTAGAAGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MASRKEGTGSTATSSSSTAGAAGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 QSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 DFSPEALKKANITFEYMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DFSPEALKKANITFEYMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSNHLG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 KNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEED
              250       260       270       280       290       300

              310       320       330       340       350  
pF1KE5 LSKLFKPPQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LSKLFKPPQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN
              310       320       330       340       350  




352 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:55:08 2016 done: Tue Nov  8 00:55:09 2016
 Total Scan time:  1.730 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]