FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1683, 196 aa 1>>>pF1KE1683 196 - 196 aa - 196 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.0465+/-0.000269; mu= 2.6702+/- 0.017 mean_var=181.5415+/-37.854, 0's: 0 Z-trim(125.4): 6 B-trim: 939 in 2/59 Lambda= 0.095189 statistics sampled from 49019 (49029) to 49019 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.864), E-opt: 0.2 (0.575), width: 16 Scan time: 7.790 The best scores are: opt bits E(85289) XP_016868582 (OMIM: 122560) PREDICTED: corticolibe ( 196) 1312 190.8 1.2e-48 XP_016868581 (OMIM: 122560) PREDICTED: corticolibe ( 196) 1312 190.8 1.2e-48 XP_016868580 (OMIM: 122560) PREDICTED: corticolibe ( 196) 1312 190.8 1.2e-48 XP_016868579 (OMIM: 122560) PREDICTED: corticolibe ( 196) 1312 190.8 1.2e-48 NP_000747 (OMIM: 122560) corticoliberin preproprot ( 196) 1312 190.8 1.2e-48 >>XP_016868582 (OMIM: 122560) PREDICTED: corticoliberin (196 aa) initn: 1312 init1: 1312 opt: 1312 Z-score: 994.6 bits: 190.8 E(85289): 1.2e-48 Smith-Waterman score: 1312; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196) 10 20 30 40 50 60 pF1KE1 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL 130 140 150 160 170 180 190 pF1KE1 AQQAHSNRKLMEIIGK :::::::::::::::: XP_016 AQQAHSNRKLMEIIGK 190 >>XP_016868581 (OMIM: 122560) PREDICTED: corticoliberin (196 aa) initn: 1312 init1: 1312 opt: 1312 Z-score: 994.6 bits: 190.8 E(85289): 1.2e-48 Smith-Waterman score: 1312; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196) 10 20 30 40 50 60 pF1KE1 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL 130 140 150 160 170 180 190 pF1KE1 AQQAHSNRKLMEIIGK :::::::::::::::: XP_016 AQQAHSNRKLMEIIGK 190 >>XP_016868580 (OMIM: 122560) PREDICTED: corticoliberin (196 aa) initn: 1312 init1: 1312 opt: 1312 Z-score: 994.6 bits: 190.8 E(85289): 1.2e-48 Smith-Waterman score: 1312; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196) 10 20 30 40 50 60 pF1KE1 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL 130 140 150 160 170 180 190 pF1KE1 AQQAHSNRKLMEIIGK :::::::::::::::: XP_016 AQQAHSNRKLMEIIGK 190 >>XP_016868579 (OMIM: 122560) PREDICTED: corticoliberin (196 aa) initn: 1312 init1: 1312 opt: 1312 Z-score: 994.6 bits: 190.8 E(85289): 1.2e-48 Smith-Waterman score: 1312; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196) 10 20 30 40 50 60 pF1KE1 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL 130 140 150 160 170 180 190 pF1KE1 AQQAHSNRKLMEIIGK :::::::::::::::: XP_016 AQQAHSNRKLMEIIGK 190 >>NP_000747 (OMIM: 122560) corticoliberin preproprotein (196 aa) initn: 1312 init1: 1312 opt: 1312 Z-score: 994.6 bits: 190.8 E(85289): 1.2e-48 Smith-Waterman score: 1312; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196) 10 20 30 40 50 60 pF1KE1 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL 130 140 150 160 170 180 190 pF1KE1 AQQAHSNRKLMEIIGK :::::::::::::::: NP_000 AQQAHSNRKLMEIIGK 190 196 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 16:07:29 2016 done: Sun Nov 6 16:07:30 2016 Total Scan time: 7.790 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]