Result of FASTA (omim) for pFN21AE6473
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6473, 453 aa
  1>>>pF1KE6473 453 - 453 aa - 453 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0514+/-0.000357; mu= 14.9390+/- 0.022
 mean_var=101.8501+/-20.034, 0's: 0 Z-trim(116.5): 23  B-trim: 217 in 1/51
 Lambda= 0.127085
 statistics sampled from 27694 (27717) to 27694 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.325), width:  16
 Scan time:  9.050

The best scores are:                                      opt bits E(85289)
NP_689485 (OMIM: 611130) charged multivesicular bo ( 453) 2941 549.8 5.5e-156
XP_016869450 (OMIM: 611130) PREDICTED: charged mul ( 495) 2823 528.2 1.9e-149
XP_006716478 (OMIM: 611130) PREDICTED: charged mul ( 429) 2294 431.2 2.7e-120
XP_016869453 (OMIM: 611130) PREDICTED: charged mul ( 343) 2189 411.8 1.4e-114
NP_001304828 (OMIM: 611130) charged multivesicular ( 343) 2189 411.8 1.4e-114
XP_016869451 (OMIM: 611130) PREDICTED: charged mul ( 385) 2071 390.2  5e-108
XP_016869452 (OMIM: 611130) PREDICTED: charged mul ( 385) 2071 390.2  5e-108
XP_016869454 (OMIM: 611130) PREDICTED: charged mul ( 319) 1542 293.2 6.9e-79
NP_078867 (OMIM: 610901) charged multivesicular bo ( 201)  246 55.4 1.6e-07
XP_005257725 (OMIM: 610901) PREDICTED: charged mul ( 245)  233 53.1 9.9e-07
NP_689497 (OMIM: 610899) charged multivesicular bo ( 233)  218 50.3 6.4e-06
NP_789782 (OMIM: 605387,610897) charged multivesic ( 224)  208 48.5 2.2e-05
NP_054888 (OMIM: 610051) charged multivesicular bo ( 265)  203 47.6 4.7e-05
NP_057494 (OMIM: 610900) charged multivesicular bo ( 219)  168 41.1  0.0035


>>NP_689485 (OMIM: 611130) charged multivesicular body p  (453 aa)
 initn: 2941 init1: 2941 opt: 2941  Z-score: 2921.5  bits: 549.8 E(85289): 5.5e-156
Smith-Waterman score: 2941; 100.0% identity (100.0% similar) in 453 aa overlap (1-453:1-453)

               10        20        30        40        50        60
pF1KE6 MWSPEREAEAPAGGDPAGLLPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MWSPEREAEAPAGGDPAGLLPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LSHSRRQGVVRLRLRDLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 LSHSRRQGVVRLRLRDLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 WGVGVFLLKPLKWTLSNMLGDNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 WGVGVFLLKPLKWTLSNMLGDNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 SELSTLCANSCPDERTFYLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 SELSTLCANSCPDERTFYLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 VYQLMQSEQLLSRKVESLSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 VYQLMQSEQLLSRKVESLSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 KLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 KLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 VSQTLAGGVTNGLDFDSEELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 VSQTLAGGVTNGLDFDSEELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAE
              370       380       390       400       410       420

              430       440       450   
pF1KE6 LEAELEKLSLSEGGLVPSSKSPKRQLEPTLKPL
       :::::::::::::::::::::::::::::::::
NP_689 LEAELEKLSLSEGGLVPSSKSPKRQLEPTLKPL
              430       440       450   

>>XP_016869450 (OMIM: 611130) PREDICTED: charged multive  (495 aa)
 initn: 2823 init1: 2823 opt: 2823  Z-score: 2804.0  bits: 528.2 E(85289): 1.9e-149
Smith-Waterman score: 2823; 98.9% identity (99.3% similar) in 441 aa overlap (1-441:1-441)

               10        20        30        40        50        60
pF1KE6 MWSPEREAEAPAGGDPAGLLPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MWSPEREAEAPAGGDPAGLLPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LSHSRRQGVVRLRLRDLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSHSRRQGVVRLRLRDLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 WGVGVFLLKPLKWTLSNMLGDNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WGVGVFLLKPLKWTLSNMLGDNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 SELSTLCANSCPDERTFYLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SELSTLCANSCPDERTFYLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 VYQLMQSEQLLSRKVESLSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYQLMQSEQLLSRKVESLSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 KLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 VSQTLAGGVTNGLDFDSEELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSQTLAGGVTNGLDFDSEELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAE
              370       380       390       400       410       420

              430       440       450                              
pF1KE6 LEAELEKLSLSEGGLVPSSKSPKRQLEPTLKPL                           
       ::::::::::::::.   ::.                                       
XP_016 LEAELEKLSLSEGGMELFSKAFGGHMAFWLTELMGPSPITPFARVPEPCRELRVVYIKTQ
              430       440       450       460       470       480

>>XP_006716478 (OMIM: 611130) PREDICTED: charged multive  (429 aa)
 initn: 2294 init1: 2294 opt: 2294  Z-score: 2280.7  bits: 431.2 E(85289): 2.7e-120
Smith-Waterman score: 2294; 98.3% identity (99.4% similar) in 359 aa overlap (1-359:1-359)

               10        20        30        40        50        60
pF1KE6 MWSPEREAEAPAGGDPAGLLPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MWSPEREAEAPAGGDPAGLLPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LSHSRRQGVVRLRLRDLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LSHSRRQGVVRLRLRDLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 WGVGVFLLKPLKWTLSNMLGDNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WGVGVFLLKPLKWTLSNMLGDNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 SELSTLCANSCPDERTFYLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SELSTLCANSCPDERTFYLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 VYQLMQSEQLLSRKVESLSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VYQLMQSEQLLSRKVESLSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 KLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::.  ... 
XP_006 KLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQEILTVKNW
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 VSQTLAGGVTNGLDFDSEELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAE
                                                                   
XP_006 RRNWTSSFRIPPKNLWICLTTPAIGILPTACLTLGSQMLNLKLNLRNCPYQREVWSQAVN
              370       380       390       400       410       420

>>XP_016869453 (OMIM: 611130) PREDICTED: charged multive  (343 aa)
 initn: 2189 init1: 2189 opt: 2189  Z-score: 2178.0  bits: 411.8 E(85289): 1.4e-114
Smith-Waterman score: 2189; 100.0% identity (100.0% similar) in 343 aa overlap (111-453:1-343)

               90       100       110       120       130       140
pF1KE6 FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG
                                     ::::::::::::::::::::::::::::::
XP_016                               MASVDSSWISWGVGVFLLKPLKWTLSNMLG
                                             10        20        30

              150       160       170       180       190       200
pF1KE6 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
               40        50        60        70        80        90

              210       220       230       240       250       260
pF1KE6 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
              100       110       120       130       140       150

              270       280       290       300       310       320
pF1KE6 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
              160       170       180       190       200       210

              330       340       350       360       370       380
pF1KE6 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEEL
              220       230       240       250       260       270

              390       400       410       420       430       440
pF1KE6 EKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAELEAELEKLSLSEGGLVPSSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAELEAELEKLSLSEGGLVPSSK
              280       290       300       310       320       330

              450   
pF1KE6 SPKRQLEPTLKPL
       :::::::::::::
XP_016 SPKRQLEPTLKPL
              340   

>>NP_001304828 (OMIM: 611130) charged multivesicular bod  (343 aa)
 initn: 2189 init1: 2189 opt: 2189  Z-score: 2178.0  bits: 411.8 E(85289): 1.4e-114
Smith-Waterman score: 2189; 100.0% identity (100.0% similar) in 343 aa overlap (111-453:1-343)

               90       100       110       120       130       140
pF1KE6 FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG
                                     ::::::::::::::::::::::::::::::
NP_001                               MASVDSSWISWGVGVFLLKPLKWTLSNMLG
                                             10        20        30

              150       160       170       180       190       200
pF1KE6 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
               40        50        60        70        80        90

              210       220       230       240       250       260
pF1KE6 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
              100       110       120       130       140       150

              270       280       290       300       310       320
pF1KE6 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
              160       170       180       190       200       210

              330       340       350       360       370       380
pF1KE6 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEEL
              220       230       240       250       260       270

              390       400       410       420       430       440
pF1KE6 EKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAELEAELEKLSLSEGGLVPSSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAELEAELEKLSLSEGGLVPSSK
              280       290       300       310       320       330

              450   
pF1KE6 SPKRQLEPTLKPL
       :::::::::::::
NP_001 SPKRQLEPTLKPL
              340   

>>XP_016869451 (OMIM: 611130) PREDICTED: charged multive  (385 aa)
 initn: 2071 init1: 2071 opt: 2071  Z-score: 2060.4  bits: 390.2 E(85289): 5e-108
Smith-Waterman score: 2071; 98.5% identity (99.1% similar) in 331 aa overlap (111-441:1-331)

               90       100       110       120       130       140
pF1KE6 FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG
                                     ::::::::::::::::::::::::::::::
XP_016                               MASVDSSWISWGVGVFLLKPLKWTLSNMLG
                                             10        20        30

              150       160       170       180       190       200
pF1KE6 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
               40        50        60        70        80        90

              210       220       230       240       250       260
pF1KE6 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
              100       110       120       130       140       150

              270       280       290       300       310       320
pF1KE6 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
              160       170       180       190       200       210

              330       340       350       360       370       380
pF1KE6 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEEL
              220       230       240       250       260       270

              390       400       410       420       430       440
pF1KE6 EKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAELEAELEKLSLSEGGLVPSSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.   ::
XP_016 EKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAELEAELEKLSLSEGGMELFSK
              280       290       300       310       320       330

              450                                             
pF1KE6 SPKRQLEPTLKPL                                          
       .                                                      
XP_016 AFGGHMAFWLTELMGPSPITPFARVPEPCRELRVVYIKTQSLNHWNAFIFKIFLL
              340       350       360       370       380     

>>XP_016869452 (OMIM: 611130) PREDICTED: charged multive  (385 aa)
 initn: 2071 init1: 2071 opt: 2071  Z-score: 2060.4  bits: 390.2 E(85289): 5e-108
Smith-Waterman score: 2071; 98.5% identity (99.1% similar) in 331 aa overlap (111-441:1-331)

               90       100       110       120       130       140
pF1KE6 FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG
                                     ::::::::::::::::::::::::::::::
XP_016                               MASVDSSWISWGVGVFLLKPLKWTLSNMLG
                                             10        20        30

              150       160       170       180       190       200
pF1KE6 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
               40        50        60        70        80        90

              210       220       230       240       250       260
pF1KE6 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
              100       110       120       130       140       150

              270       280       290       300       310       320
pF1KE6 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
              160       170       180       190       200       210

              330       340       350       360       370       380
pF1KE6 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEEL
              220       230       240       250       260       270

              390       400       410       420       430       440
pF1KE6 EKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAELEAELEKLSLSEGGLVPSSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.   ::
XP_016 EKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAELEAELEKLSLSEGGMELFSK
              280       290       300       310       320       330

              450                                             
pF1KE6 SPKRQLEPTLKPL                                          
       .                                                      
XP_016 AFGGHMAFWLTELMGPSPITPFARVPEPCRELRVVYIKTQSLNHWNAFIFKIFLL
              340       350       360       370       380     

>>XP_016869454 (OMIM: 611130) PREDICTED: charged multive  (319 aa)
 initn: 1542 init1: 1542 opt: 1542  Z-score: 1537.3  bits: 293.2 E(85289): 6.9e-79
Smith-Waterman score: 1542; 97.6% identity (99.2% similar) in 249 aa overlap (111-359:1-249)

               90       100       110       120       130       140
pF1KE6 FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG
                                     ::::::::::::::::::::::::::::::
XP_016                               MASVDSSWISWGVGVFLLKPLKWTLSNMLG
                                             10        20        30

              150       160       170       180       190       200
pF1KE6 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
               40        50        60        70        80        90

              210       220       230       240       250       260
pF1KE6 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
              100       110       120       130       140       150

              270       280       290       300       310       320
pF1KE6 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
              160       170       180       190       200       210

              330       340       350       360       370       380
pF1KE6 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEEL
       :::::::::::::::::::::::::::::::::.  ...                     
XP_016 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQEILTVKNWRRNWTSSFRIPPKNLWICLT
              220       230       240       250       260       270

              390       400       410       420       430       440
pF1KE6 EKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAELEAELEKLSLSEGGLVPSSK
                                                                   
XP_016 TPAIGILPTACLTLGSQMLNLKLNLRNCPYQREVWSQAVNLQKGNWNRL           
              280       290       300       310                    

>>NP_078867 (OMIM: 610901) charged multivesicular body p  (201 aa)
 initn: 144 init1:  95 opt: 246  Z-score: 255.9  bits: 55.4 E(85289): 1.6e-07
Smith-Waterman score: 246; 26.4% identity (62.9% similar) in 197 aa overlap (228-423:7-199)

       200       210       220       230       240       250       
pF1KE6 YLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVES
                                     : : : :.. : .. :: :... : .  . 
NP_078                         MGNLFGRKKQSRVTEQDKAILQLKQQRDKLRQYQKR
                                       10        20        30      

       260       270       280       290       300       310       
pF1KE6 LSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQT
       ..:. :: .  ::.  : :.:. :   :: :.  :. ..  . .......... :  .: 
NP_078 IAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQI
         40        50        60        70        80        90      

       320       330       340       350       360       370       
pF1KE6 DQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDS
       .. :... : :   :.   . ...:..: ..:. ::  . : .... :::. :.    : 
NP_078 EMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQ---EDE
        100       110       120       130       140       150      

       380       390       400       410        420       430      
pF1KE6 EELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVP-NPRISDAELEAELEKLSLSEGGLV
       . . .::. . :.  . : ..:..:  ... ..:: . :  .::: :             
NP_078 DAILEELSAITQEQIELP-EVPSEPLPEKIPENVPVKARPRQAELVAAS           
           160       170        180       190       200            

        440       450   
pF1KE6 PSSKSPKRQLEPTLKPL

>>XP_005257725 (OMIM: 610901) PREDICTED: charged multive  (245 aa)
 initn: 125 init1:  95 opt: 233  Z-score: 241.8  bits: 53.1 E(85289): 9.9e-07
Smith-Waterman score: 233; 25.9% identity (61.1% similar) in 216 aa overlap (228-441:7-213)

       200       210       220       230       240       250       
pF1KE6 YLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVES
                                     : : : :.. : .. :: :... : .  . 
XP_005                         MGNLFGRKKQSRVTEQDKAILQLKQQRDKLRQYQKR
                                       10        20        30      

       260       270       280       290       300       310       
pF1KE6 LSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQT
       ..:. :: .  ::.  : :.:. :   :: :.  :. ..  . .......... :  .: 
XP_005 IAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQI
         40        50        60        70        80        90      

       320       330       340       350       360       370       
pF1KE6 DQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDS
       .. :... : :   :.   . ...:..: ..:. ::  . : .... :::. :   . : 
XP_005 EMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFT---QEDE
        100       110       120       130       140          150   

       380       390       400       410       420         430     
pF1KE6 EELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAE--LEAELEKLSLSEGGL
       . . .::. .    :.: ..::. : .. . ...:.  . :.   ::   ::  : ::. 
XP_005 DAILEELSAI----TQEQIELPEVP-SEPLPEKIPGISMFDSFEWLEFAGEKWIL-EGNK
           160           170        180       190       200        

         440       450                       
pF1KE6 VPSSKSPKRQLEPTLKPL                    
       .  :..                                
XP_005 TECSQAFLGRGQALLPGCLAWGRACLALGLGLGFPGVR
       210       220       230       240     




453 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:38:30 2016 done: Tue Nov  8 13:38:31 2016
 Total Scan time:  9.050 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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