Result of FASTA (omim) for pFN21AE4367
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4367, 386 aa
  1>>>pF1KE4367     386 - 386 aa - 386 aa
Library: /omim/omim.rfq.tfa
  64369986 residues in 92320 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8526+/-0.000331; mu= 16.0017+/- 0.021
 mean_var=118.7797+/-23.618, 0's: 0 Z-trim(118.3): 61  B-trim: 62 in 1/52
 Lambda= 0.117680
 statistics sampled from 32318 (32380) to 32318 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.351), width:  16
 Scan time:  5.050

The best scores are:                                      opt bits E(92320)
NP_003831 (OMIM: 603614) tumor necrosis factor rec ( 386) 2571 447.4 2.9e-125
NP_003833 (OMIM: 275355,603612) tumor necrosis fac ( 440) 1090 196.0 1.6e-49
NP_003832 (OMIM: 603613) tumor necrosis factor rec ( 259)  819 149.8 7.6e-36
NP_671716 (OMIM: 275355,603612) tumor necrosis fac ( 411)  664 123.7 8.8e-28
NP_003835 (OMIM: 603611) tumor necrosis factor rec ( 468)  632 118.3 4.1e-26
NP_001307548 (OMIM: 134637,601859) tumor necrosis  ( 197)  226 49.0 1.3e-05
NP_690611 (OMIM: 134637,601859) tumor necrosis fac ( 220)  226 49.0 1.4e-05
NP_000034 (OMIM: 134637,601859) tumor necrosis fac ( 335)  226 49.2 1.8e-05
XP_011538069 (OMIM: 134637,601859) tumor necrosis  ( 350)  226 49.2 1.9e-05
XP_011538068 (OMIM: 134637,601859) tumor necrosis  ( 362)  226 49.2 1.9e-05
XP_006717882 (OMIM: 134637,601859) tumor necrosis  ( 362)  226 49.2 1.9e-05
XP_011538066 (OMIM: 134637,601859) tumor necrosis  ( 389)  226 49.3   2e-05
NP_001284534 (OMIM: 602746) tumor necrosis factor  ( 184)  218 47.6 3.1e-05
XP_006711082 (OMIM: 602746) tumor necrosis factor  ( 197)  218 47.6 3.3e-05
NP_003811 (OMIM: 602746) tumor necrosis factor rec ( 283)  218 47.8 4.2e-05
NP_690610 (OMIM: 134637,601859) tumor necrosis fac ( 314)  217 47.6 5.1e-05
NP_002537 (OMIM: 239000,602643) tumor necrosis fac ( 401)  218 47.9 5.4e-05
XP_011538067 (OMIM: 134637,601859) tumor necrosis  ( 368)  217 47.7 5.7e-05
NP_001056 (OMIM: 142680,191190,614810) tumor necro ( 455)  207 46.1 0.00021
NP_002498 (OMIM: 162010) tumor necrosis factor rec ( 427)  197 44.4 0.00066
XP_016857721 (OMIM: 600315,615593) tumor necrosis  ( 277)  176 40.6  0.0058
NP_003318 (OMIM: 600315,615593) tumor necrosis fac ( 277)  176 40.6  0.0058
XP_016857720 (OMIM: 600315,615593) tumor necrosis  ( 303)  176 40.7  0.0062
XP_011540377 (OMIM: 600315,615593) tumor necrosis  ( 303)  176 40.7  0.0062


>>NP_003831 (OMIM: 603614) tumor necrosis factor recepto  (386 aa)
 initn: 2571 init1: 2571 opt: 2571  Z-score: 2370.5  bits: 447.4 E(92320): 2.9e-125
Smith-Waterman score: 2571; 99.7% identity (99.7% similar) in 386 aa overlap (1-386:1-386)

               10        20        30        40        50        60
pF1KE4 MGLWGQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVAVLLPVRVDSATIPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MGLWGQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVAVLLPVRVDSATIPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 QDEVPQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QDEVPQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 CKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 CKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 KNESAASSTGKTPAAEETVTTILGMLASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KNESAASSTGKTPAAEETVTTILGMLASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 KGICSGGGGGPERVHRVLFRRRSCPSRVPGAEDNARNETLSNRYLQPTQVSEQEIQGQEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KGICSGGGGGPERVHRVLFRRRSCPSRVPGAEDNARNETLSNRYLQPTQVSEQEIQGQEL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 AELTGVTVESPEEPQRLLEQAEAEGCQRRRLLVPVNDADSADISTLLDASATLEEGHAKE
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AELTGVTVELPEEPQRLLEQAEAEGCQRRRLLVPVNDADSADISTLLDASATLEEGHAKE
              310       320       330       340       350       360

              370       380      
pF1KE4 TIQDQLVGSEKLFYEEDEAGSATSCL
       ::::::::::::::::::::::::::
NP_003 TIQDQLVGSEKLFYEEDEAGSATSCL
              370       380      

>>NP_003833 (OMIM: 275355,603612) tumor necrosis factor   (440 aa)
 initn: 1035 init1: 582 opt: 1090  Z-score: 1010.9  bits: 196.0 E(92320): 1.6e-49
Smith-Waterman score: 1090; 53.0% identity (71.6% similar) in 345 aa overlap (5-342:5-336)

               10        20        30        40         50         
pF1KE4 MGLWGQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVA-VLLPVRVDSATIP
           ::..:.::.::  . :: : : :.::    :.. : .:..:: ::: : ..:: : 
NP_003 MEQRGQNAPAASGARKRHGPGPREARGARP---GPRVPKTLVLVVAAVLLLVSAESALIT
               10        20        30           40        50       

      60        70        80        90       100       110         
pF1KE4 RQDEVPQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCT
       .:: .::: .::::.: : .:  :: : : ::    :  :  : ::.   :.:  :: ::
NP_003 QQDLAPQQRAAPQQKRSSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCT
        60        70        80        90       100       110       

     120       130       140       150       160       170         
pF1KE4 VCKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIK
        : ::... : :::::.::::::.:.:....:::::: ::::::::::::..::: :::.
NP_003 RCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIE
       120       130       140       150       160       170       

     180        190       200       210        220       230       
pF1KE4 C-KNESAASSTGKTPAAEETVTTILGMLASPYHYL-IIIVVLVIILAVVVVGFSCR----
       : ..::... .:..::.:::::.  :  :::     ::: : :  ....:. : :.    
NP_003 CVHKESGTKHSGEVPAVEETVTSSPGTPASPCSLSGIIIGVTVAAVVLIVAVFVCKSLLW
       180       190       200       210       220       230       

           240       250       260       270       280       290   
pF1KE4 KKFISYLKGICSGGGGGPERVHRVLFRRRSCPSRVPGAEDNARNETLSNRYLQPTQVSEQ
       :: . ::::::::::: :::: :         :. ::::::. :: .:   :::::: ::
NP_003 KKVLPYLKGICSGGGGDPERVDR--------SSQRPGAEDNVLNEIVS--ILQPTQVPEQ
       240       250       260               270         280       

           300       310       320       330       340       350   
pF1KE4 EIQGQELAELTGVTVESPEEPQRLLEQAEAEGCQRRRLLVPVNDADSADISTLLDASATL
       :.. :: :: :::.. :: : ..::: ::::  ::::::::.:..: ..           
NP_003 EMEVQEPAEPTGVNMLSPGESEHLLEPAEAERSQRRRLLVPANEGDPTETLRQCFDDFAD
       290       300       310       320       330       340       

           360       370       380                                 
pF1KE4 EEGHAKETIQDQLVGSEKLFYEEDEAGSATSCL                           
                                                                   
NP_003 LVPFDSWEPLMRKLGLMDNEIKVAKAEAAGHRDTLYTMLIKWVNKTGRDASVHTLLDALE
       350       360       370       380       390       400       

>>NP_003832 (OMIM: 603613) tumor necrosis factor recepto  (259 aa)
 initn: 913 init1: 680 opt: 819  Z-score: 765.1  bits: 149.8 E(92320): 7.6e-36
Smith-Waterman score: 819; 71.2% identity (85.3% similar) in 170 aa overlap (35-204:5-173)

           10        20        30        40        50        60    
pF1KE4 GQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVAVLLPVRVDSATIPRQDEV
                                     :: ::::: :::::::: . :::  ::.::
NP_003                           MARIPKTLKFVVVIVAVLLPVLAYSATTARQEEV
                                         10        20        30    

           70        80        90       100       110       120    
pF1KE4 PQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTVCKSG
       :::::::::::.:.: :::::::::::.:::::::::::::: :::: :::. :::::: 
NP_003 PQQTVAPQQQRHSFKGEECPAGSHRSEHTGACNPCTEGVDYTNASNNEPSCFPCTVCKSD
           40        50        60        70        80        90    

          130       140       150       160       170       180    
pF1KE4 QTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNES
       : .::::: ::::::::..:.:...::::::: : . :: : :.:::::  .::.: .: 
NP_003 QKHKSSCTMTRDTVCQCKEGTFRNENSPEMCRKC-SRCPSGEVQVSNCTSWDDIQCVEEF
          100       110       120        130       140       150   

          190       200       210       220       230       240    
pF1KE4 AASSTGKTPAAEETVTTILGMLASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYLKGIC
       .:..: .:::::::..:  :                                        
NP_003 GANATVETPAAEETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAAEETM
           160       170       180       190       200       210   

>>NP_671716 (OMIM: 275355,603612) tumor necrosis factor   (411 aa)
 initn: 1028 init1: 575 opt: 664  Z-score: 620.4  bits: 123.7 E(92320): 8.8e-28
Smith-Waterman score: 980; 49.6% identity (67.3% similar) in 339 aa overlap (5-342:5-307)

               10        20        30        40         50         
pF1KE4 MGLWGQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVA-VLLPVRVDSATIP
           ::..:.::.::  . :: : : :.::    :.. : .:..:: ::: : ..:: : 
NP_671 MEQRGQNAPAASGARKRHGPGPREARGARP---GPRVPKTLVLVVAAVLLLVSAESALIT
               10        20        30           40        50       

      60        70        80        90       100       110         
pF1KE4 RQDEVPQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCT
       .:: .::: .::::.: : .:  :: : : ::    :  :  : ::.   :.:  :: ::
NP_671 QQDLAPQQRAAPQQKRSSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCT
        60        70        80        90       100       110       

     120       130       140       150       160       170         
pF1KE4 VCKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIK
        : ::... : :::::.::::::.:.:....:::::: ::::::::::::..::: :::.
NP_671 RCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIE
       120       130       140       150       160       170       

     180       190       200       210       220       230         
pF1KE4 CKNESAASSTGKTPAAEETVTTILGMLASPYHYLIIIVVLVIILAVVVVGFSCRKKFISY
       : .. ..               :.:         . ....:.:.:: :      :: . :
NP_671 CVHKESG--------------IIIG---------VTVAAVVLIVAVFVCKSLLWKKVLPY
       180                              190       200       210    

     240       250       260       270       280       290         
pF1KE4 LKGICSGGGGGPERVHRVLFRRRSCPSRVPGAEDNARNETLSNRYLQPTQVSEQEIQGQE
       :::::::::: :::: :         :. ::::::. :: .:   :::::: :::.. ::
NP_671 LKGICSGGGGDPERVDR--------SSQRPGAEDNVLNEIVS--ILQPTQVPEQEMEVQE
          220       230               240         250       260    

     300       310       320       330       340       350         
pF1KE4 LAELTGVTVESPEEPQRLLEQAEAEGCQRRRLLVPVNDADSADISTLLDASATLEEGHAK
        :: :::.. :: : ..::: ::::  ::::::::.:..: ..                 
NP_671 PAEPTGVNMLSPGESEHLLEPAEAERSQRRRLLVPANEGDPTETLRQCFDDFADLVPFDS
          270       280       290       300       310       320    

     360       370       380                                       
pF1KE4 ETIQDQLVGSEKLFYEEDEAGSATSCL                                 
                                                                   
NP_671 WEPLMRKLGLMDNEIKVAKAEAAGHRDTLYTMLIKWVNKTGRDASVHTLLDALETLGERL
          330       340       350       360       370       380    

>>NP_003835 (OMIM: 603611) tumor necrosis factor recepto  (468 aa)
 initn: 1043 init1: 517 opt: 632  Z-score: 590.4  bits: 118.3 E(92320): 4.1e-26
Smith-Waterman score: 918; 44.2% identity (57.8% similar) in 443 aa overlap (5-384:60-466)

                                         10        20        30    
pF1KE4                           MGLWGQSVPTASSARAGRYPGARTASGTRPWLLD
                                     ::  :.:  ::::: :: : :  . : :  
NP_003 AAATPSKVWGSSAGRIEPRGGGRGALPTSMGQHGPSAR-ARAGRAPGPRPAREASPRLRV
      30        40        50        60         70        80        

           40        50         60        70        80        90   
pF1KE4 PKILKFVVFIVAVLLPVRVDSA-TIPRQDEVPQQTVAPQQQRRSLKEEECPAGSHRSEYT
        : .::::  :.::: :  .:: ::  .:    :... :: ..:   : :: ::::::. 
NP_003 HKTFKFVV--VGVLLQVVPSSAATIKLHD----QSIGTQQWEHSPLGELCPPGSHRSEHP
       90         100       110           120       130       140  

           100       110       120       130       140       150   
pF1KE4 GACNPCTEGVDYTIASNNLPSCLLCTVCKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPE
       :::: ::::: :: ::::: .:: ::.::: . ..: :::::.:.:::. :.:.. :: :
NP_003 GACNRCTEGVGYTNASNNLFACLPCTACKSDEEERSPCTTTRNTACQCKPGTFRNDNSAE
            150       160       170       180       190       200  

           160       170       180       190       200       210   
pF1KE4 MCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKTPAAEETVTTILGMLASPYHYL
       ::: :  :::::::::..::: :::.: ..   :..:..                   ..
NP_003 MCRKCSRGCPRGMVKVKDCTPWSDIECVHKE--SGNGHNI------------------WV
            210       220       230         240                    

           220       230       240       250       260       270   
pF1KE4 IIIVVLVIILAVVVVGFSCRKKFISYLKGICSGGGGGPERVHRVLFRRRSCPSRVPGAED
       :..:.::. : .:.: . :          : :: :: :. . :: : : .   : :::::
NP_003 ILVVTLVVPLLLVAVLIVC--------CCIGSGCGGDPKCMDRVCFWRLGL-LRGPGAED
            250       260               270       280        290   

           280       290       300       310       320       330   
pF1KE4 NARNETLSNRYLQPTQVSEQEIQGQELAELTGVTVESPEEPQRLLEQAEAEGCQRRRLLV
       ::.:: :::     : ::::....:: :.::::::.:: : : ::  ::::: :::::::
NP_003 NAHNEILSNADSLSTFVSEQQMESQEPADLTGVTVQSPGEAQCLLGPAEAEGSQRRRLLV
           300       310       320       330       340       350   

                                                                   
pF1KE4 PVNDAD------------------------------------------------------
       :.: ::                                                      
NP_003 PANGADPTETLMLFFDKFANIVPFDSWDQLMRQLDLTKNEIDVVRAGTAGPGDALYAMLM
           360       370       380       390       400       410   

             340       350       360       370       380      
pF1KE4 --------SADISTLLDASATLEEGHAKETIQDQLVGSEKLFYEEDEAGSATSCL
               .:.: :::::   .:: ::.: ::: :: : :..: :: .:::.:  
NP_003 KWVNKTGRNASIHTLLDALERMEERHAREKIQDLLVDSGKFIYLEDGTGSAVSLE
           420       430       440       450       460        

>>NP_001307548 (OMIM: 134637,601859) tumor necrosis fact  (197 aa)
 initn: 174 init1:  97 opt: 226  Z-score: 222.5  bits: 49.0 E(92320): 1.3e-05
Smith-Waterman score: 226; 29.6% identity (57.8% similar) in 135 aa overlap (64-190:44-175)

            40        50        60        70        80        90   
pF1KE4 DPKILKFVVFIVAVLLPVRVDSATIPRQDEVPQQTVAPQQQRRSLKEEECPAGSHRSE--
                                     :  :..   ..  .. .. :: : ....  
NP_001 SVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCHKPCPPGERKARDC
            20        30        40        50        60        70   

                 100       110       120         130       140     
pF1KE4 -YTGA---CNPCTEGVDYTIASNNLPSCLLCTVCKSGQ--TNKSSCTTTRDTVCQCEKGS
         .:    : :: :: .::  ..   .:  : .:  :.    . .:: :..: :.:. . 
NP_001 TVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNF
            80        90       100       110       120       130   

         150       160       170       180       190       200     
pF1KE4 FQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKTPAAEETVTTILGM
       : ...  : :  : : : .:..:  .::  :. :::.:.. :. :               
NP_001 FCNSTVCEHCDPC-TKCEHGIIK--ECTLTSNTKCKEEGSRSNLGWLCLLLLPIPLIVWG
           140        150         160       170       180       190

         210       220       230       240       250       260     
pF1KE4 LASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYLKGICSGGGGGPERVHRVLFRRRSCP
                                                                   
NP_001 NSGNKFI                                                     
                                                                   

>>NP_690611 (OMIM: 134637,601859) tumor necrosis factor   (220 aa)
 initn: 174 init1:  97 opt: 226  Z-score: 221.9  bits: 49.0 E(92320): 1.4e-05
Smith-Waterman score: 226; 29.6% identity (57.8% similar) in 135 aa overlap (64-190:44-175)

            40        50        60        70        80        90   
pF1KE4 DPKILKFVVFIVAVLLPVRVDSATIPRQDEVPQQTVAPQQQRRSLKEEECPAGSHRSE--
                                     :  :..   ..  .. .. :: : ....  
NP_690 SVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCHKPCPPGERKARDC
            20        30        40        50        60        70   

                 100       110       120         130       140     
pF1KE4 -YTGA---CNPCTEGVDYTIASNNLPSCLLCTVCKSGQ--TNKSSCTTTRDTVCQCEKGS
         .:    : :: :: .::  ..   .:  : .:  :.    . .:: :..: :.:. . 
NP_690 TVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNF
            80        90       100       110       120       130   

         150       160       170       180       190       200     
pF1KE4 FQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKTPAAEETVTTILGM
       : ...  : :  : : : .:..:  .::  :. :::.:.. :. :               
NP_690 FCNSTVCEHCDPC-TKCEHGIIK--ECTLTSNTKCKEEGSRSNLGWLCLLLLPIPLIVWV
           140        150         160       170       180       190

         210       220       230       240       250       260     
pF1KE4 LASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYLKGICSGGGGGPERVHRVLFRRRSCP
                                                                   
NP_690 KRKEVQKTCRKHRKENQGSHESPTLNPMLT                              
              200       210       220                              

>>NP_000034 (OMIM: 134637,601859) tumor necrosis factor   (335 aa)
 initn: 175 init1:  97 opt: 226  Z-score: 219.6  bits: 49.2 E(92320): 1.8e-05
Smith-Waterman score: 226; 29.6% identity (57.8% similar) in 135 aa overlap (64-190:44-175)

            40        50        60        70        80        90   
pF1KE4 DPKILKFVVFIVAVLLPVRVDSATIPRQDEVPQQTVAPQQQRRSLKEEECPAGSHRSE--
                                     :  :..   ..  .. .. :: : ....  
NP_000 SVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCHKPCPPGERKARDC
            20        30        40        50        60        70   

                 100       110       120         130       140     
pF1KE4 -YTGA---CNPCTEGVDYTIASNNLPSCLLCTVCKSGQ--TNKSSCTTTRDTVCQCEKGS
         .:    : :: :: .::  ..   .:  : .:  :.    . .:: :..: :.:. . 
NP_000 TVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNF
            80        90       100       110       120       130   

         150       160       170       180       190       200     
pF1KE4 FQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKTPAAEETVTTILGM
       : ...  : :  : : : .:..:  .::  :. :::.:.. :. :               
NP_000 FCNSTVCEHCDPC-TKCEHGIIK--ECTLTSNTKCKEEGSRSNLGWLCLLLLPIPLIVWV
           140        150         160       170       180       190

         210       220       230       240       250       260     
pF1KE4 LASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYLKGICSGGGGGPERVHRVLFRRRSCP
                                                                   
NP_000 KRKEVQKTCRKHRKENQGSHESPTLNPETVAINLSDVDLSKYITTIAGVMTLSQVKGFVR
              200       210       220       230       240       250

>>XP_011538069 (OMIM: 134637,601859) tumor necrosis fact  (350 aa)
 initn: 175 init1:  97 opt: 226  Z-score: 219.4  bits: 49.2 E(92320): 1.9e-05
Smith-Waterman score: 226; 29.6% identity (57.8% similar) in 135 aa overlap (64-190:59-190)

            40        50        60        70        80        90   
pF1KE4 DPKILKFVVFIVAVLLPVRVDSATIPRQDEVPQQTVAPQQQRRSLKEEECPAGSHRSE--
                                     :  :..   ..  .. .. :: : ....  
XP_011 SVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCHKPCPPGERKARDC
       30        40        50        60        70        80        

                 100       110       120         130       140     
pF1KE4 -YTGA---CNPCTEGVDYTIASNNLPSCLLCTVCKSGQ--TNKSSCTTTRDTVCQCEKGS
         .:    : :: :: .::  ..   .:  : .:  :.    . .:: :..: :.:. . 
XP_011 TVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNF
       90       100       110       120       130       140        

         150       160       170       180       190       200     
pF1KE4 FQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKTPAAEETVTTILGM
       : ...  : :  : : : .:..:  .::  :. :::.:.. :. :               
XP_011 FCNSTVCEHCDPC-TKCEHGIIK--ECTLTSNTKCKEEGSRSNLGWLCLLLLPIPLIVWV
      150       160        170         180       190       200     

         210       220       230       240       250       260     
pF1KE4 LASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYLKGICSGGGGGPERVHRVLFRRRSCP
                                                                   
XP_011 KRKEVQKTCRKHRKENQGSHESPTLNPETVAINLSDVDLSKYITTIAGVMTLSQVKGFVR
         210       220       230       240       250       260     

>>XP_011538068 (OMIM: 134637,601859) tumor necrosis fact  (362 aa)
 initn: 175 init1:  97 opt: 226  Z-score: 219.2  bits: 49.2 E(92320): 1.9e-05
Smith-Waterman score: 226; 29.6% identity (57.8% similar) in 135 aa overlap (64-190:71-202)

            40        50        60        70        80        90   
pF1KE4 DPKILKFVVFIVAVLLPVRVDSATIPRQDEVPQQTVAPQQQRRSLKEEECPAGSHRSE--
                                     :  :..   ..  .. .. :: : ....  
XP_011 SVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCHKPCPPGERKARDC
               50        60        70        80        90       100

                 100       110       120         130       140     
pF1KE4 -YTGA---CNPCTEGVDYTIASNNLPSCLLCTVCKSGQ--TNKSSCTTTRDTVCQCEKGS
         .:    : :: :: .::  ..   .:  : .:  :.    . .:: :..: :.:. . 
XP_011 TVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNF
              110       120       130       140       150       160

         150       160       170       180       190       200     
pF1KE4 FQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKTPAAEETVTTILGM
       : ...  : :  : : : .:..:  .::  :. :::.:.. :. :               
XP_011 FCNSTVCEHCDPC-TKCEHGIIK--ECTLTSNTKCKEEGSRSNLGWLCLLLLPIPLIVWV
              170        180         190       200       210       

         210       220       230       240       250       260     
pF1KE4 LASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYLKGICSGGGGGPERVHRVLFRRRSCP
                                                                   
XP_011 KRKEVQKTCRKHRKENQGSHESPTLNPETVAINLSDVDLSKYITTIAGVMTLSQVKGFVR
       220       230       240       250       260       270       




386 residues in 1 query   sequences
64369986 residues in 92320 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:41:36 2019 done: Thu Oct 24 21:41:37 2019
 Total Scan time:  5.050 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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