Result of FASTA (ccds) for
pFN21AE1663
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1663, 183 aa
1>>>pF1KE1663 183 - 183 aa - 183 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2521+/-0.000667; mu= 13.8865+/- 0.040
mean_var=73.2262+/-14.365, 0's: 0 Z-trim(111.1): 63 B-trim: 5 in 1/51
Lambda= 0.149879
statistics sampled from 12036 (12100) to 12036 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.372), width: 16
Scan time: 1.620
The best scores are: opt bits E(32554)
CCDS5814.1 UBE2H gene_id:7328|Hs108|chr7 ( 183) 1228 273.9 3.8e-74
CCDS47710.1 UBE2H gene_id:7328|Hs108|chr7 ( 152) 546 126.4 8.2e-30
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 348 83.6 6.3e-17
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 346 83.1 8.5e-17
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 330 79.6 7.8e-16
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 314 76.2 1e-14
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 315 76.5 1.1e-14
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 309 75.1 1.8e-14
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 309 75.1 2.1e-14
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 308 74.9 2.5e-14
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 303 73.8 4.4e-14
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 303 73.8 5.2e-14
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 303 73.8 5.3e-14
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 300 73.2 8.3e-14
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 298 72.7 8.8e-14
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 295 72.1 1.8e-13
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 292 71.5 3.4e-13
CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 286 70.2 7.8e-13
CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 ( 140) 282 69.3 1.2e-12
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 279 68.7 2e-12
CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 ( 157) 270 66.7 7.8e-12
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 270 66.7 8.5e-12
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 270 66.8 9.1e-12
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 270 66.8 9.6e-12
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 268 66.4 1.3e-11
CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 266 65.9 1.9e-11
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 264 65.4 1.9e-11
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 264 65.5 2.4e-11
CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20 ( 150) 261 64.7 2.9e-11
CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 122) 255 63.4 6e-11
>>CCDS5814.1 UBE2H gene_id:7328|Hs108|chr7 (183 aa)
initn: 1228 init1: 1228 opt: 1228 Z-score: 1444.6 bits: 273.9 E(32554): 3.8e-74
Smith-Waterman score: 1228; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)
10 20 30 40 50 60
pF1KE1 MSSPSPGKRRMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MSSPSPGKRRMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 YPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 YPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPID
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 PLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQEEGTGDSSSESSMSDFSEDEAQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQEEGTGDSSSESSMSDFSEDEAQD
130 140 150 160 170 180
pF1KE1 MEL
:::
CCDS58 MEL
>>CCDS47710.1 UBE2H gene_id:7328|Hs108|chr7 (152 aa)
initn: 546 init1: 546 opt: 546 Z-score: 648.7 bits: 126.4 E(32554): 8.2e-30
Smith-Waterman score: 940; 83.1% identity (83.1% similar) in 183 aa overlap (1-183:1-152)
10 20 30 40 50 60
pF1KE1 MSSPSPGKRRMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSSPSPGKRRMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 YPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPID
:::::::: :::::::::::::::::::::
CCDS47 YPFKSPSI-------------------------------DLTNIFESFLPQLLAYPNPID
70 80
130 140 150 160 170 180
pF1KE1 PLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQEEGTGDSSSESSMSDFSEDEAQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQEEGTGDSSSESSMSDFSEDEAQD
90 100 110 120 130 140
pF1KE1 MEL
:::
CCDS47 MEL
150
>>CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 (152 aa)
initn: 308 init1: 169 opt: 348 Z-score: 417.3 bits: 83.6 E(32554): 6.3e-17
Smith-Waterman score: 348; 33.1% identity (70.9% similar) in 148 aa overlap (5-147:3-147)
10 20 30 40 50
pF1KE1 MSSPSPGKRRMDTDVVKLIESKHEVTILGGLNEFVVK-----FYGPQGTPYEGGVWKVRV
.:..::. : .: :. : . :. .: . ..::.:::.: :..:. .
CCDS41 MSTPARRRLMRDFKRLQEDP-PVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVI
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 DLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAY
.. ..:: : :.. :..:.::::. :.:..:::.... :. ::...:. : . .::
CCDS41 EFSEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTS-IQSLLDE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 PNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQEEGTGDSSSESSMSDFSE
::: .: :..:: .: . .::..... ...
CCDS41 PNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWNDS
120 130 140 150
180
pF1KE1 DEAQDMEL
>>CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX (152 aa)
initn: 308 init1: 169 opt: 346 Z-score: 415.0 bits: 83.1 E(32554): 8.5e-17
Smith-Waterman score: 346; 33.3% identity (72.1% similar) in 147 aa overlap (5-147:3-147)
10 20 30 40 50
pF1KE1 MSSPSPGKRRMDTDVVKLIESKHE-VTILGGLNEFVVK---FYGPQGTPYEGGVWKVRVD
.:..::. : .: :. :. . :...: ..::.:::.: :..:. ..
CCDS14 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIE
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 LPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYP
. ..:: : :.. :..:.::::. :.:..:::.... :. ::...:. : . .:: :
CCDS14 FTEEYPNKPPTVRFVSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTS-IQSLLDEP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 NPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQEEGTGDSSSESSMSDFSED
:: .: :..:: .: . .::..... ...
CCDS14 NPNSPANSQAAQLYQENKREYEKRVSAIVEQSWRDC
120 130 140 150
180
pF1KE1 EAQDMEL
>>CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX (119 aa)
initn: 308 init1: 169 opt: 330 Z-score: 397.8 bits: 79.6 E(32554): 7.8e-16
Smith-Waterman score: 330; 36.7% identity (78.0% similar) in 109 aa overlap (39-147:8-114)
10 20 30 40 50 60
pF1KE1 RRMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSI
.::.:::.: :..:. ... ..:: : :..
CCDS78 MVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTV
10 20 30
70 80 90 100 110 120
pF1KE1 GFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAA
:..:.::::. :.:..:::.... :. ::...:. : . .:: ::: .: :..::
CCDS78 RFVSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTS-IQSLLDEPNPNSPANSQAAQ
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE1 MYLHRPEEYKQKIKEYIQKYATEEALKEQEEGTGDSSSESSMSDFSEDEAQDMEL
.: . .::..... ...
CCDS78 LYQENKREYEKRVSAIVEQSWRDC
100 110
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 291 init1: 160 opt: 314 Z-score: 377.8 bits: 76.2 E(32554): 1e-14
Smith-Waterman score: 314; 40.9% identity (70.0% similar) in 110 aa overlap (40-149:39-146)
10 20 30 40 50 60
pF1KE1 RMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIG
:: . :.:::. . : .: :::: :.:.
CCDS72 ELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAM
: .::.::::. ..:..:::.. . :. ..... : . .:: ::: ::: : : .
CCDS72 FTTKIYHPNIN-SNGSICLDILRSQWSPALTVSKVLLS-ICSLLCDPNPDDPLVPDIAQI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 YLHRPEEYKQKIKEYIQKYATEEALKEQEEGTGDSSSESSMSDFSEDEAQDMEL
: :.:... .:. ::::
CCDS72 YKSDKEKYNRHAREWTQKYAM
130 140
>>CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 (200 aa)
initn: 313 init1: 242 opt: 315 Z-score: 377.1 bits: 76.5 E(32554): 1.1e-14
Smith-Waterman score: 315; 35.9% identity (68.3% similar) in 145 aa overlap (9-149:10-153)
10 20 30 40 50
pF1KE1 MSSPSPGKRRMDTDVVKLIE-SKHEVTI-LGGLN--EFVVKFYGPQGTPYEGGVWKVRV
.: .:.: : ::... . : : :. .. :: :::::: .....
CCDS33 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 DLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAY
.:. :::. :.. :..::.::::. ..:..:::.... :.: . : ... : : :::
CCDS33 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALLAA
70 80 90 100 110
120 130 140 150 160 170
pF1KE1 PNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQEEGTGDSSSESSMSDFSE
.: :: .. .: .: . :: .:: . . . ::
CCDS33 AEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAV
120 130 140 150 160 170
180
pF1KE1 DEAQDMEL
CCDS33 IVALSSKSWDVETATELLLSN
180 190 200
>>CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 (118 aa)
initn: 285 init1: 167 opt: 309 Z-score: 373.3 bits: 75.1 E(32554): 1.8e-14
Smith-Waterman score: 309; 38.2% identity (70.9% similar) in 110 aa overlap (40-149:10-117)
10 20 30 40 50 60
pF1KE1 RMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIG
::. .::.:::. . . .: :::: :...
CCDS47 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVA
10 20 30
70 80 90 100 110 120
pF1KE1 FMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAM
: ..:.::::. ..:..:::.. . :. ..... : . .:: ::: ::: . : .
CCDS47 FTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLS-ICSLLCDPNPDDPLVPEIARI
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE1 YLHRPEEYKQKIKEYIQKYATEEALKEQEEGTGDSSSESSMSDFSEDEAQDMEL
: :.:.. .:. ::::
CCDS47 YKTDREKYNRIAREWTQKYAM
100 110
>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa)
initn: 285 init1: 167 opt: 309 Z-score: 372.0 bits: 75.1 E(32554): 2.1e-14
Smith-Waterman score: 309; 38.2% identity (70.9% similar) in 110 aa overlap (40-149:39-146)
10 20 30 40 50 60
pF1KE1 RMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIG
::. .::.:::. . . .: :::: :...
CCDS43 ELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAM
: ..:.::::. ..:..:::.. . :. ..... : . .:: ::: ::: . : .
CCDS43 FTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLS-ICSLLCDPNPDDPLVPEIARI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 YLHRPEEYKQKIKEYIQKYATEEALKEQEEGTGDSSSESSMSDFSEDEAQDMEL
: :.:.. .:. ::::
CCDS43 YKTDREKYNRIAREWTQKYAM
130 140
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 285 init1: 170 opt: 308 Z-score: 370.8 bits: 74.9 E(32554): 2.5e-14
Smith-Waterman score: 308; 39.1% identity (70.0% similar) in 110 aa overlap (40-149:39-146)
10 20 30 40 50 60
pF1KE1 RMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIG
::. .::.:::. . . .: :::: :...
CCDS54 ELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAM
: .::.::::. ..:..:::.. . :. ..... : . .:: ::: ::: . :
CCDS54 FTTKIYHPNIN-SNGSICLDILRSQWSPALTVSKVLLS-ICSLLCDPNPDDPLVPEIAHT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 YLHRPEEYKQKIKEYIQKYATEEALKEQEEGTGDSSSESSMSDFSEDEAQDMEL
: :.:.. .:. ::::
CCDS54 YKADREKYNRLAREWTQKYAM
130 140
183 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 16:16:20 2016 done: Sun Nov 6 16:16:20 2016
Total Scan time: 1.620 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]