Result of FASTA (omim) for pFN21AE5165
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5165, 140 aa
  1>>>pF1KE5165 140 - 140 aa - 140 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3613+/-0.000318; mu= 10.4275+/- 0.020
 mean_var=55.3760+/-10.854, 0's: 0 Z-trim(115.4): 1  B-trim: 20 in 1/51
 Lambda= 0.172351
 statistics sampled from 25846 (25847) to 25846 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.303), width:  16
 Scan time:  4.760

The best scores are:                                      opt bits E(85289)
NP_005828 (OMIM: 606113) ribonuclease P protein su ( 140)  906 232.9 1.3e-61


>>NP_005828 (OMIM: 606113) ribonuclease P protein subuni  (140 aa)
 initn: 906 init1: 906 opt: 906  Z-score: 1227.2  bits: 232.9 E(85289): 1.3e-61
Smith-Waterman score: 906; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KE5 MAENREPRGAVEAELDPVEYTLRKRLPSRLPRRPNDIYVNMKTDFKAQLARCQKLLDGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MAENREPRGAVEAELDPVEYTLRKRLPSRLPRRPNDIYVNMKTDFKAQLARCQKLLDGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 RGQNACSEIYIHGLGLAINRAINIALQLQAGSFGSLQVAANTSTVELVDELEPETDTREP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RGQNACSEIYIHGLGLAINRAINIALQLQAGSFGSLQVAANTSTVELVDELEPETDTREP
               70        80        90       100       110       120

              130       140
pF1KE5 LTRIRNNSAIHIRVFRVTPK
       ::::::::::::::::::::
NP_005 LTRIRNNSAIHIRVFRVTPK
              130       140




140 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:12:43 2016 done: Mon Nov  7 22:12:43 2016
 Total Scan time:  4.760 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com