FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5262, 179 aa 1>>>pF1KE5262 179 - 179 aa - 179 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8867+/-0.0003; mu= 15.2171+/- 0.019 mean_var=60.5044+/-12.675, 0's: 0 Z-trim(116.6): 24 B-trim: 1623 in 2/53 Lambda= 0.164885 statistics sampled from 27947 (27971) to 27947 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.328), width: 16 Scan time: 4.080 The best scores are: opt bits E(85289) NP_945192 (OMIM: 600312) 7,8-dihydro-8-oxoguanine ( 179) 1254 306.1 2e-83 NP_945190 (OMIM: 600312) 7,8-dihydro-8-oxoguanine ( 179) 1254 306.1 2e-83 NP_945187 (OMIM: 600312) 7,8-dihydro-8-oxoguanine ( 179) 1254 306.1 2e-83 NP_002443 (OMIM: 600312) 7,8-dihydro-8-oxoguanine ( 156) 1086 266.1 1.9e-71 NP_945186 (OMIM: 600312) 7,8-dihydro-8-oxoguanine ( 156) 1086 266.1 1.9e-71 NP_945191 (OMIM: 600312) 7,8-dihydro-8-oxoguanine ( 156) 1086 266.1 1.9e-71 NP_945188 (OMIM: 600312) 7,8-dihydro-8-oxoguanine ( 156) 1086 266.1 1.9e-71 NP_060753 (OMIM: 615792,616903) probable 8-oxo-dGT ( 164) 162 46.3 2.9e-05 NP_001287670 (OMIM: 609232) peroxisomal NADH pyrop ( 444) 147 43.0 0.00078 XP_005272154 (OMIM: 609232) PREDICTED: peroxisomal ( 444) 147 43.0 0.00078 NP_113626 (OMIM: 609232) peroxisomal NADH pyrophos ( 462) 147 43.0 0.00081 XP_005272152 (OMIM: 609232) PREDICTED: peroxisomal ( 462) 147 43.0 0.00081 NP_001291674 (OMIM: 615792,616903) probable 8-oxo- ( 145) 140 41.0 0.001 >>NP_945192 (OMIM: 600312) 7,8-dihydro-8-oxoguanine trip (179 aa) initn: 1254 init1: 1254 opt: 1254 Z-score: 1618.7 bits: 306.1 E(85289): 2e-83 Smith-Waterman score: 1254; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179) 10 20 30 40 50 60 pF1KE5 MSGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 MSGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV 130 140 150 160 170 >>NP_945190 (OMIM: 600312) 7,8-dihydro-8-oxoguanine trip (179 aa) initn: 1254 init1: 1254 opt: 1254 Z-score: 1618.7 bits: 306.1 E(85289): 2e-83 Smith-Waterman score: 1254; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179) 10 20 30 40 50 60 pF1KE5 MSGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 MSGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV 130 140 150 160 170 >>NP_945187 (OMIM: 600312) 7,8-dihydro-8-oxoguanine trip (179 aa) initn: 1254 init1: 1254 opt: 1254 Z-score: 1618.7 bits: 306.1 E(85289): 2e-83 Smith-Waterman score: 1254; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179) 10 20 30 40 50 60 pF1KE5 MSGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 MSGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV 130 140 150 160 170 >>NP_002443 (OMIM: 600312) 7,8-dihydro-8-oxoguanine trip (156 aa) initn: 1086 init1: 1086 opt: 1086 Z-score: 1403.6 bits: 266.1 E(85289): 1.9e-71 Smith-Waterman score: 1086; 100.0% identity (100.0% similar) in 156 aa overlap (24-179:1-156) 10 20 30 40 50 60 pF1KE5 MSGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG ::::::::::::::::::::::::::::::::::::: NP_002 MGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG 10 20 30 70 80 90 100 110 120 pF1KE5 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE 40 50 60 70 80 90 130 140 150 160 170 pF1KE5 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV 100 110 120 130 140 150 >>NP_945186 (OMIM: 600312) 7,8-dihydro-8-oxoguanine trip (156 aa) initn: 1086 init1: 1086 opt: 1086 Z-score: 1403.6 bits: 266.1 E(85289): 1.9e-71 Smith-Waterman score: 1086; 100.0% identity (100.0% similar) in 156 aa overlap (24-179:1-156) 10 20 30 40 50 60 pF1KE5 MSGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG ::::::::::::::::::::::::::::::::::::: NP_945 MGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG 10 20 30 70 80 90 100 110 120 pF1KE5 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE 40 50 60 70 80 90 130 140 150 160 170 pF1KE5 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV 100 110 120 130 140 150 >>NP_945191 (OMIM: 600312) 7,8-dihydro-8-oxoguanine trip (156 aa) initn: 1086 init1: 1086 opt: 1086 Z-score: 1403.6 bits: 266.1 E(85289): 1.9e-71 Smith-Waterman score: 1086; 100.0% identity (100.0% similar) in 156 aa overlap (24-179:1-156) 10 20 30 40 50 60 pF1KE5 MSGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG ::::::::::::::::::::::::::::::::::::: NP_945 MGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG 10 20 30 70 80 90 100 110 120 pF1KE5 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE 40 50 60 70 80 90 130 140 150 160 170 pF1KE5 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV 100 110 120 130 140 150 >>NP_945188 (OMIM: 600312) 7,8-dihydro-8-oxoguanine trip (156 aa) initn: 1086 init1: 1086 opt: 1086 Z-score: 1403.6 bits: 266.1 E(85289): 1.9e-71 Smith-Waterman score: 1086; 100.0% identity (100.0% similar) in 156 aa overlap (24-179:1-156) 10 20 30 40 50 60 pF1KE5 MSGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG ::::::::::::::::::::::::::::::::::::: NP_945 MGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG 10 20 30 70 80 90 100 110 120 pF1KE5 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE 40 50 60 70 80 90 130 140 150 160 170 pF1KE5 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV 100 110 120 130 140 150 >>NP_060753 (OMIM: 615792,616903) probable 8-oxo-dGTP di (164 aa) initn: 154 init1: 119 opt: 162 Z-score: 215.4 bits: 46.3 E(85289): 2.9e-05 Smith-Waterman score: 162; 27.5% identity (57.7% similar) in 149 aa overlap (18-161:9-150) 10 20 30 40 50 60 pF1KE5 MSGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG :. :: .:.. . : .:. :::: .: . ::: .. :: NP_060 MTASAQPRGRRPG-VGVGVVVTSC--KHPRCVLLGKRKGSVGAGSFQLPGG 10 20 30 40 70 80 90 100 110 pF1KE5 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGT-PV ... ::: :. :.:: ::..: . .: ...: :. . . : .. .. : NP_060 HLEFGETWEECAQRETWEEAALHLKNVH-FASVVNSFIEKENYHYVTILMKGEVDVTHDS 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE5 ESDEMRP----CWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLRE : ...: : . .:.... : :. .. : :.. . :: NP_060 EPKNVEPEKNESW---EWVPWEELPPLDQLFWGLRCLKEQGYDPFKEDLNHLVGYKGNHL 110 120 130 140 150 160 pF1KE5 VDTV >>NP_001287670 (OMIM: 609232) peroxisomal NADH pyrophosp (444 aa) initn: 130 init1: 93 opt: 147 Z-score: 189.8 bits: 43.0 E(85289): 0.00078 Smith-Waterman score: 147; 31.8% identity (61.8% similar) in 110 aa overlap (32-134:308-409) 10 20 30 40 50 pF1KE5 SGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQ--RVLLGMKKRGFGAGRWNGFG .. :..:. . ::: .:: : : .. .. NP_001 GGYKRLCLKEDCPSLNGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKR-FPPGMFTCLA 280 290 300 310 320 330 60 70 80 90 100 110 pF1KE5 GKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELM--DVHVFCTDSIQGT : .. ::::::..:::..::::. :::.. . . .: : .. . : .: NP_001 GFIEPGETIEDAVRREVEEESGV------KVGHVQY-VACQPWPMPSSLMIGCLALAVST 340 350 360 370 380 120 130 140 150 160 170 pF1KE5 PVESD--EMRPC-WFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLR .. : :.. :: .:. NP_001 EIKVDKNEIEDARWFTREQVLDVLTKGKQQAFFVPPSRAIAHQLIKHWIRINPNL 390 400 410 420 430 440 >>XP_005272154 (OMIM: 609232) PREDICTED: peroxisomal NAD (444 aa) initn: 130 init1: 93 opt: 147 Z-score: 189.8 bits: 43.0 E(85289): 0.00078 Smith-Waterman score: 147; 31.8% identity (61.8% similar) in 110 aa overlap (32-134:308-409) 10 20 30 40 50 pF1KE5 SGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQ--RVLLGMKKRGFGAGRWNGFG .. :..:. . ::: .:: : : .. .. XP_005 GGYKRLCLKEDCPSLNGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKR-FPPGMFTCLA 280 290 300 310 320 330 60 70 80 90 100 110 pF1KE5 GKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELM--DVHVFCTDSIQGT : .. ::::::..:::..::::. :::.. . . .: : .. . : .: XP_005 GFIEPGETIEDAVRREVEEESGV------KVGHVQY-VACQPWPMPSSLMIGCLALAVST 340 350 360 370 380 120 130 140 150 160 170 pF1KE5 PVESD--EMRPC-WFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLR .. : :.. :: .:. XP_005 EIKVDKNEIEDARWFTREQVLDVLTKGKQQAFFVPPSRAIAHQLIKHWIRINPNL 390 400 410 420 430 440 179 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:59:17 2016 done: Mon Nov 7 22:59:17 2016 Total Scan time: 4.080 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]