FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5262, 179 aa 1>>>pF1KE5262 179 - 179 aa - 179 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1889+/-0.000667; mu= 13.4884+/- 0.040 mean_var=61.6499+/-12.519, 0's: 0 Z-trim(109.8): 17 B-trim: 0 in 0/50 Lambda= 0.163346 statistics sampled from 11159 (11173) to 11159 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.343), width: 16 Scan time: 1.820 The best scores are: opt bits E(32554) CCDS5329.1 NUDT1 gene_id:4521|Hs108|chr7 ( 179) 1254 303.3 5.1e-83 CCDS5330.1 NUDT1 gene_id:4521|Hs108|chr7 ( 156) 1086 263.7 3.7e-71 >>CCDS5329.1 NUDT1 gene_id:4521|Hs108|chr7 (179 aa) initn: 1254 init1: 1254 opt: 1254 Z-score: 1604.0 bits: 303.3 E(32554): 5.1e-83 Smith-Waterman score: 1254; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179) 10 20 30 40 50 60 pF1KE5 MSGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MSGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV 130 140 150 160 170 >>CCDS5330.1 NUDT1 gene_id:4521|Hs108|chr7 (156 aa) initn: 1086 init1: 1086 opt: 1086 Z-score: 1390.9 bits: 263.7 E(32554): 3.7e-71 Smith-Waterman score: 1086; 100.0% identity (100.0% similar) in 156 aa overlap (24-179:1-156) 10 20 30 40 50 60 pF1KE5 MSGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG ::::::::::::::::::::::::::::::::::::: CCDS53 MGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG 10 20 30 70 80 90 100 110 120 pF1KE5 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE 40 50 60 70 80 90 130 140 150 160 170 pF1KE5 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV 100 110 120 130 140 150 179 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:59:16 2016 done: Mon Nov 7 22:59:16 2016 Total Scan time: 1.820 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]