Result of FASTA (omim) for pFN21AE9420
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9420, 337 aa
  1>>>pF1KE9420 337 - 337 aa - 337 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5663+/-0.000445; mu= 20.5567+/- 0.027
 mean_var=130.1236+/-33.674, 0's: 0 Z-trim(110.5): 626  B-trim: 1168 in 1/52
 Lambda= 0.112434
 statistics sampled from 18049 (18860) to 18049 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.556), E-opt: 0.2 (0.221), width:  16
 Scan time:  7.100

The best scores are:                                      opt bits E(85289)
NP_003958 (OMIM: 607405) trace amine-associated re ( 337) 2286 383.0  5e-106
NP_778227 (OMIM: 608282) trace amine-associated re ( 348) 1052 182.8 9.2e-46
NP_778237 (OMIM: 608923) trace amine-associated re ( 345) 1025 178.4 1.9e-44
NP_444508 (OMIM: 606927) trace amine-associated re ( 342) 1019 177.5 3.7e-44
NP_001028252 (OMIM: 604849) trace amine-associated ( 351)  973 170.0 6.7e-42
NP_055441 (OMIM: 604849) trace amine-associated re ( 306)  923 161.8 1.7e-39
NP_612200 (OMIM: 609333) trace amine-associated re ( 339)  561 103.2 8.6e-22
NP_071640 (OMIM: 142703) histamine H2 receptor iso ( 359)  538 99.5 1.2e-20
XP_006714928 (OMIM: 142703) PREDICTED: histamine H ( 362)  538 99.5 1.2e-20
NP_001124527 (OMIM: 142703) histamine H2 receptor  ( 397)  538 99.5 1.2e-20
XP_016864915 (OMIM: 142703) PREDICTED: histamine H ( 422)  538 99.6 1.3e-20
XP_011532851 (OMIM: 142703) PREDICTED: histamine H ( 422)  538 99.6 1.3e-20
XP_011532850 (OMIM: 142703) PREDICTED: histamine H ( 422)  538 99.6 1.3e-20
XP_005265961 (OMIM: 142703) PREDICTED: histamine H ( 422)  538 99.6 1.3e-20
XP_006714927 (OMIM: 142703) PREDICTED: histamine H ( 422)  538 99.6 1.3e-20
NP_000672 (OMIM: 104210) alpha-2A adrenergic recep ( 465)  398 76.9 9.2e-14
NP_001035262 (OMIM: 602164) 5-hydroxytryptamine re ( 360)  395 76.3 1.1e-13
NP_955525 (OMIM: 602164) 5-hydroxytryptamine recep ( 378)  395 76.3 1.2e-13
NP_001035259 (OMIM: 602164) 5-hydroxytryptamine re ( 387)  395 76.3 1.2e-13
NP_000861 (OMIM: 602164) 5-hydroxytryptamine recep ( 388)  395 76.3 1.2e-13
NP_001273339 (OMIM: 602164) 5-hydroxytryptamine re ( 411)  395 76.4 1.2e-13
NP_001035263 (OMIM: 602164) 5-hydroxytryptamine re ( 428)  395 76.4 1.2e-13
NP_001041 (OMIM: 182452) somatostatin receptor typ ( 369)  372 72.6 1.5e-12
NP_000674 (OMIM: 104250) alpha-2C adrenergic recep ( 462)  369 72.2 2.4e-12
NP_001138757 (OMIM: 600018) mu-type opioid recepto ( 389)  365 71.5 3.4e-12
NP_001008504 (OMIM: 600018) mu-type opioid recepto ( 392)  365 71.5 3.4e-12
NP_001138755 (OMIM: 600018) mu-type opioid recepto ( 397)  365 71.5 3.5e-12
NP_000905 (OMIM: 600018) mu-type opioid receptor i ( 400)  365 71.5 3.5e-12
NP_001138756 (OMIM: 600018) mu-type opioid recepto ( 403)  365 71.5 3.5e-12
NP_001138754 (OMIM: 600018) mu-type opioid recepto ( 406)  365 71.5 3.5e-12
NP_001272452 (OMIM: 600018) mu-type opioid recepto ( 414)  365 71.5 3.5e-12
NP_001008503 (OMIM: 600018) mu-type opioid recepto ( 418)  365 71.5 3.6e-12
NP_001138758 (OMIM: 600018) mu-type opioid recepto ( 420)  365 71.5 3.6e-12
NP_001008505 (OMIM: 600018) mu-type opioid recepto ( 446)  365 71.6 3.7e-12
NP_001272453 (OMIM: 600018) mu-type opioid recepto ( 493)  365 71.6 3.9e-12
NP_001138751 (OMIM: 600018) mu-type opioid recepto ( 493)  365 71.6 3.9e-12
XP_016884413 (OMIM: 182453) PREDICTED: somatostati ( 418)  363 71.2 4.5e-12
NP_001042 (OMIM: 182453) somatostatin receptor typ ( 418)  363 71.2 4.5e-12
XP_005261778 (OMIM: 182453) PREDICTED: somatostati ( 418)  363 71.2 4.5e-12
NP_001265616 (OMIM: 182453) somatostatin receptor  ( 418)  363 71.2 4.5e-12
XP_011528651 (OMIM: 182453) PREDICTED: somatostati ( 418)  363 71.2 4.5e-12
XP_016884412 (OMIM: 182453) PREDICTED: somatostati ( 418)  363 71.2 4.5e-12
XP_006724374 (OMIM: 182453) PREDICTED: somatostati ( 418)  363 71.2 4.5e-12
NP_000015 (OMIM: 109690,600807,601665) beta-2 adre ( 413)  359 70.5 6.9e-12
NP_000902 (OMIM: 165195) delta-type opioid recepto ( 372)  352 69.3 1.4e-11
NP_000673 (OMIM: 104260,607876) alpha-2B adrenergi ( 450)  351 69.3 1.8e-11
NP_004239 (OMIM: 600895) prolactin-releasing pepti ( 370)  349 68.8   2e-11
NP_000855 (OMIM: 182133) 5-hydroxytryptamine recep ( 377)  344 68.0 3.6e-11
NP_057624 (OMIM: 605569) probable G-protein couple ( 423)  340 67.5   6e-11
NP_001243689 (OMIM: 312861) 5-hydroxytryptamine re ( 458)  340 67.5 6.2e-11


>>NP_003958 (OMIM: 607405) trace amine-associated recept  (337 aa)
 initn: 2286 init1: 2286 opt: 2286  Z-score: 2024.4  bits: 383.0 E(85289): 5e-106
Smith-Waterman score: 2286; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)

               10        20        30        40        50        60
pF1KE9 MRAVFIQGAEEHPAAFCYQVNGSCPRTVHTLGIQLVIYLACAAGMLIIVLGNVFVAFAVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MRAVFIQGAEEHPAAFCYQVNGSCPRTVHTLGIQLVIYLACAAGMLIIVLGNVFVAFAVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 YFKALHTPTNFLLLSLALADMFLGLLVLPLSTIRSVESCWFFGDFLCRLHTYLDTLFCLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 YFKALHTPTNFLLLSLALADMFLGLLVLPLSTIRSVESCWFFGDFLCRLHTYLDTLFCLT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 SIFHLCFISIDRHCAICDPLLYPSKFTVRVALRYILAGWGVPAAYTSLFLYTDVVETRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SIFHLCFISIDRHCAICDPLLYPSKFTVRVALRYILAGWGVPAAYTSLFLYTDVVETRLS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 QWLEEMPCVGSCQLLLNKFWGWLNFPLFFVPCLIMISLYVKIFVVATRQAQQITTLSKSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QWLEEMPCVGSCQLLLNKFWGWLNFPLFFVPCLIMISLYVKIFVVATRQAQQITTLSKSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 AGAAKHERKAAKTLGIAVGIYLLCWLPFTIDTMVDSLLHFITPPLVFDIFIWFAYFNSAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AGAAKHERKAAKTLGIAVGIYLLCWLPFTIDTMVDSLLHFITPPLVFDIFIWFAYFNSAC
              250       260       270       280       290       300

              310       320       330       
pF1KE9 NPIIYVFSYQWFRKALKLTLSQKVFSPQTRTVDLYQE
       :::::::::::::::::::::::::::::::::::::
NP_003 NPIIYVFSYQWFRKALKLTLSQKVFSPQTRTVDLYQE
              310       320       330       

>>NP_778227 (OMIM: 608282) trace amine-associated recept  (348 aa)
 initn: 1100 init1: 690 opt: 1052  Z-score: 942.5  bits: 182.8 E(85289): 9.2e-46
Smith-Waterman score: 1052; 46.2% identity (75.5% similar) in 331 aa overlap (16-337:13-343)

               10         20        30        40        50         
pF1KE9 MRAVFIQGAEEHPAAFCYQ-VNGSCPRTVHTLGIQLVIYLACAAGMLIIVLGNVFVAFAV
                      .::. :: :: .: .. : . ..: . . : .. ..::..: .:.
NP_778    MVNNFSQAEAVELCYKNVNESCIKTPYSPGPRSILYAVLGFGAVLAAFGNLLVMIAI
                  10        20        30        40        50       

      60        70        80        90       100       110         
pF1KE9 SYFKALHTPTNFLLLSLALADMFLGLLVLPLSTIRSVESCWFFGDFLCRLHTYLDTLFCL
        .:: ::::::::. ::: ::...:. :.:.::.:::::::.:::  :..:: .:: ::.
NP_778 LHFKQLHTPTNFLIASLACADFLVGVTVMPFSTVRSVESCWYFGDSYCKFHTCFDTSFCF
        60        70        80        90       100       110       

     120       130       140       150       160       170         
pF1KE9 TSIFHLCFISIDRHCAICDPLLYPSKFTVRVALRYILAGWGVPAAYTSLFLYTDVVETRL
       .:.:::: ::.::. :. ::: ::.:::: :.   :. .:   ..:.  ..:: . :  .
NP_778 ASLFHLCCISVDRYIAVTDPLTYPTKFTVSVSGICIVLSWFFSVTYSFSIFYTGANEEGI
       120       130       140       150       160       170       

     180       190       200       210       220       230         
pF1KE9 SQWLEEMPCVGSCQLLLNKFWGWLNFPLFFVPCLIMISLYVKIFVVATRQAQQI-TTLSK
        . .  . :::.::  ::. :  : : :::.: . :. .: :::.:: .::..: .: :.
NP_778 EELVVALTCVGGCQAPLNQNWVLLCFLLFFIPNVAMVFIYSKIFLVAKHQARKIESTASQ
       180       190       200       210       220       230       

      240              250       260       270       280       290 
pF1KE9 SLAGA-------AKHERKAAKTLGIAVGIYLLCWLPFTIDTMVDSLLHFITPPLVFDIFI
       . ...       ::.:::::::::::.. .:. :::. .:...:. ..::::: :..:..
NP_778 AQSSSESYKERVAKRERKAAKTLGIAMAAFLVSWLPYLVDAVIDAYMNFITPPYVYEILV
       240       250       260       270       280       290       

             300       310       320       330            
pF1KE9 WFAYFNSACNPIIYVFSYQWFRKALKLTLSQKVFSPQTRTVDLYQE     
       : .:.::: ::.::.: :::: ::.:: .: ::.  .. :..:..:     
NP_778 WCVYYNSAMNPLIYAFFYQWFGKAIKLIVSGKVLRTDSSTTNLFSEEVETD
       300       310       320       330       340        

>>NP_778237 (OMIM: 608923) trace amine-associated recept  (345 aa)
 initn: 1037 init1: 699 opt: 1025  Z-score: 918.9  bits: 178.4 E(85289): 1.9e-44
Smith-Waterman score: 1025; 43.8% identity (74.9% similar) in 331 aa overlap (16-337:13-343)

               10         20        30        40        50         
pF1KE9 MRAVFIQGAEEHPAAFCY-QVNGSCPRTVHTLGIQLVIYLACAAGMLIIVLGNVFVAFAV
                      .:: .::::: .   . : ....:.. . : .. :.::..: ...
NP_778    MSSNSSLLVAVQLCYANVNGSCVKIPFSPGSRVILYIVFGFGAVLAVFGNLLVMISI
                  10        20        30        40        50       

      60        70        80        90       100       110         
pF1KE9 SYFKALHTPTNFLLLSLALADMFLGLLVLPLSTIRSVESCWFFGDFLCRLHTYLDTLFCL
        .:: ::.:::::. ::: ::...:. :.:.: .:.:::::.::  .: .::  :. :: 
NP_778 LHFKQLHSPTNFLVASLACADFLVGVTVMPFSMVRTVESCWYFGRSFCTFHTCCDVAFCY
        60        70        80        90       100       110       

     120       130       140       150       160       170         
pF1KE9 TSIFHLCFISIDRHCAICDPLLYPSKFTVRVALRYILAGWGVPAAYTSLFLYTDVVETRL
       .:.::::::::::. :. :::.::.:::: :.   : ..: .:  :..  .:: : .  :
NP_778 SSLFHLCFISIDRYIAVTDPLVYPTKFTVSVSGICISVSWILPLMYSGAVFYTGVYDDGL
       120       130       140       150       160       170       

     180       190       200       210       220       230         
pF1KE9 SQWLEEMPCVGSCQLLLNKFWGWLNFPLFFVPCLIMISLYVKIFVVATRQAQQI-TTLSK
        .  . . :.:.:: ..:. :   .:  ::.: .::: :: .::.:: :::..: .: ::
NP_778 EELSDALNCIGGCQTVVNQNWVLTDFLSFFIPTFIMIILYGNIFLVARRQAKKIENTGSK
       180       190       200       210       220       230       

      240              250       260       270       280       290 
pF1KE9 SLAGA-------AKHERKAAKTLGIAVGIYLLCWLPFTIDTMVDSLLHFITPPLVFDIFI
       . ...       :..:::::::::..:  ... :::..::...:... ::::  ...:  
NP_778 TESSSESYKARVARRERKAAKTLGVTVVAFMISWLPYSIDSLIDAFMGFITPACIYEICC
       240       250       260       270       280       290       

             300       310       320       330         
pF1KE9 WFAYFNSACNPIIYVFSYQWFRKALKLTLSQKVFSPQTRTVDLYQE  
       : ::.::: ::.::.. : :::::.:. .. .:.. .. :..:..:  
NP_778 WCAYYNSAMNPLIYALFYPWFRKAIKVIVTGQVLKNSSATMNLFSEHI
       300       310       320       330       340     

>>NP_444508 (OMIM: 606927) trace amine-associated recept  (342 aa)
 initn: 1063 init1: 690 opt: 1019  Z-score: 913.7  bits: 177.5 E(85289): 3.7e-44
Smith-Waterman score: 1019; 44.1% identity (73.7% similar) in 331 aa overlap (16-337:12-342)

               10         20        30        40        50         
pF1KE9 MRAVFIQGAEEHPAAFCYQ-VNGSCPRTVHTLGIQLVIYLACAAGMLIIVLGNVFVAFAV
                      .::. ::::: .: .. : ....: : . : :. :.::..:  .:
NP_444     MTSNFSQPVVQLCYEDVNGSCIETPYSPGSRVILYTAFSFGSLLAVFGNLLVMTSV
                   10        20        30        40        50      

      60        70        80        90       100       110         
pF1KE9 SYFKALHTPTNFLLLSLALADMFLGLLVLPLSTIRSVESCWFFGDFLCRLHTYLDTLFCL
        .:: ::.:::::. ::: ::...:. :. .: .:.:::::.::  .: ::.  :. :: 
NP_444 LHFKQLHSPTNFLIASLACADFLVGVTVMLFSMVRTVESCWYFGAKFCTLHSCCDVAFCY
         60        70        80        90       100       110      

     120       130       140       150       160       170         
pF1KE9 TSIFHLCFISIDRHCAICDPLLYPSKFTVRVALRYILAGWGVPAAYTSLFLYTDVVETRL
       .:..::::: :::. .. :::.: .:::: :.   : ..: .: .:..  .:: : .  :
NP_444 SSVLHLCFICIDRYIVVTDPLVYATKFTVSVSGICISVSWILPLTYSGAVFYTGVNDDGL
        120       130       140       150       160       170      

     180       190       200       210       220       230         
pF1KE9 SQWLEEMPCVGSCQLLLNKFWGWLNFPLFFVPCLIMISLYVKIFVVATRQAQQITTLSKS
        . .  . :::.::..... :  ..: :::.: :.:: :: :::..: .:: .: : :..
NP_444 EELVSALNCVGGCQIIVSQGWVLIDFLLFFIPTLVMIILYSKIFLIAKQQAIKIETTSSK
        180       190       200       210       220       230      

     240               250       260       270       280       290 
pF1KE9 LAGA--------AKHERKAAKTLGIAVGIYLLCWLPFTIDTMVDSLLHFITPPLVFDIFI
       . ..        ::.:::::::::..:  ... :::.:.: ..:... :.::  ...:  
NP_444 VESSSESYKIRVAKRERKAAKTLGVTVLAFVISWLPYTVDILIDAFMGFLTPAYIYEICC
        240       250       260       270       280       290      

             300       310       320       330       
pF1KE9 WFAYFNSACNPIIYVFSYQWFRKALKLTLSQKVFSPQTRTVDLYQE
       : ::.::: ::.::.. : :::::.:: ::  :.. .. :..:. :
NP_444 WSAYYNSAMNPLIYALFYPWFRKAIKLILSGDVLKASSSTISLFLE
        300       310       320       330       340  

>>NP_001028252 (OMIM: 604849) trace amine-associated rec  (351 aa)
 initn: 976 init1: 566 opt: 973  Z-score: 873.3  bits: 170.0 E(85289): 6.7e-42
Smith-Waterman score: 973; 43.3% identity (75.6% similar) in 307 aa overlap (21-326:30-336)

                        10        20        30        40        50 
pF1KE9          MRAVFIQGAEEHPAAFCYQVNGSCPRTVHTLGIQLVIYLACAAGMLIIVLG
                                    : :::.. ..::.....:   :....: ..:
NP_001 MAVSSEQHELSHFKRTQTKKEKFNCSEYGNRSCPENERSLGVRVAMYSFMAGSIFITIFG
               10        20        30        40        50        60

              60        70        80        90       100       110 
pF1KE9 NVFVAFAVSYFKALHTPTNFLLLSLALADMFLGLLVLPLSTIRSVESCWFFGDFLCRLHT
       :. . ...:::: ::::::::.::.:..:..::. ..: : :::::.::.::  .:... 
NP_001 NLAMIISISYFKQLHTPTNFLILSMAITDFLLGFTIMPYSMIRSVENCWYFGLTFCKIYY
               70        80        90       100       110       120

             120       130       140       150       160       170 
pF1KE9 YLDTLFCLTSIFHLCFISIDRHCAICDPLLYPSKFTVRVALRYILAGWGVPAAYTSLFLY
        .: .. .::::::: ..:::  ::: :::: .:.:. :  : .:  :.::.:..   ..
NP_001 SFDLMLSITSIFHLCSVAIDRFYAICYPLLYSTKITIPVIKRLLLLCWSVPGAFAFGVVF
              130       140       150       160       170       180

             180       190       200        210       220       230
pF1KE9 TDVVETRLSQWLEEMPCVGSCQLLLNKFWGWLNFPL-FFVPCLIMISLYVKIFVVATRQA
       ...    .  .   . : .:: ...::.::   :   ::.:  .:...: :::.:. ..:
NP_001 SEAYADGIEGYDILVACSSSCPVMFNKLWGTTLFMAGFFTPGSMMVGIYGKIFAVSRKHA
              190       200       210       220       230       240

              240       250       260       270       280       290
pF1KE9 QQITTLSKSLAGAAKHERKAAKTLGIAVGIYLLCWLPFTIDTMVDSLLHFITPPLVFDIF
       . :..: ..  . .:...::::::::..:..::::.:  .  ..: .:.: :: ..:: .
NP_001 HAINNLRENQNNQVKKDKKAAKTLGIVIGVFLLCWFPCFFTILLDPFLNFSTPVVLFDAL
              250       260       270       280       290       300

              300       310       320       330           
pF1KE9 IWFAYFNSACNPIIYVFSYQWFRKALKLTLSQKVFSPQTRTVDLYQE    
        ::.::::.:::.:: : : :::.:::  :  :.::               
NP_001 TWFGYFNSTCNPLIYGFFYPWFRRALKYILLGKIFSSCFHNTILCMQKESE
              310       320       330       340       350 

>>NP_055441 (OMIM: 604849) trace amine-associated recept  (306 aa)
 initn: 924 init1: 514 opt: 923  Z-score: 830.0  bits: 161.8 E(85289): 1.7e-39
Smith-Waterman score: 923; 43.6% identity (74.9% similar) in 291 aa overlap (37-326:1-291)

         10        20        30        40        50        60      
pF1KE9 QGAEEHPAAFCYQVNGSCPRTVHTLGIQLVIYLACAAGMLIIVLGNVFVAFAVSYFKALH
                                     .:   :....: ..::. . ...:::: ::
NP_055                               MYSFMAGSIFITIFGNLAMIISISYFKQLH
                                             10        20        30

         70        80        90       100       110       120      
pF1KE9 TPTNFLLLSLALADMFLGLLVLPLSTIRSVESCWFFGDFLCRLHTYLDTLFCLTSIFHLC
       ::::::.::.:..:..::. ..: : :::::.::.::  .:...  .: .. .:::::::
NP_055 TPTNFLILSMAITDFLLGFTIMPYSMIRSVENCWYFGLTFCKIYYSFDLMLSITSIFHLC
               40        50        60        70        80        90

        130       140       150       160       170       180      
pF1KE9 FISIDRHCAICDPLLYPSKFTVRVALRYILAGWGVPAAYTSLFLYTDVVETRLSQWLEEM
        ..:::  ::: :::: .:.:. :  : .:  :.::.:..   .....    .  .   .
NP_055 SVAIDRFYAICYPLLYSTKITIPVIKRLLLLCWSVPGAFAFGVVFSEAYADGIEGYDILV
              100       110       120       130       140       150

        190       200        210       220       230       240     
pF1KE9 PCVGSCQLLLNKFWGWLNFPL-FFVPCLIMISLYVKIFVVATRQAQQITTLSKSLAGAAK
        : .:: ...::.::   :   ::.:  .:...: :::.:. ..:. :..: ..  . .:
NP_055 ACSSSCPVMFNKLWGTTLFMAGFFTPGSMMVGIYGKIFAVSRKHAHAINNLRENQNNQVK
              160       170       180       190       200       210

         250       260       270       280       290       300     
pF1KE9 HERKAAKTLGIAVGIYLLCWLPFTIDTMVDSLLHFITPPLVFDIFIWFAYFNSACNPIIY
       ...::::::::..:..::::.:  .  ..: .:.: :: ..:: . ::.::::.:::.::
NP_055 KDKKAAKTLGIVIGVFLLCWFPCFFTILLDPFLNFSTPVVLFDALTWFGYFNSTCNPLIY
              220       230       240       250       260       270

         310       320       330           
pF1KE9 VFSYQWFRKALKLTLSQKVFSPQTRTVDLYQE    
        : : :::.:::  :  :.::               
NP_055 GFFYPWFRRALKYILLGKIFSSCFHNTILCMQKESE
              280       290       300      

>>NP_612200 (OMIM: 609333) trace amine-associated recept  (339 aa)
 initn: 762 init1: 440 opt: 561  Z-score: 512.2  bits: 103.2 E(85289): 8.6e-22
Smith-Waterman score: 893; 39.0% identity (71.5% similar) in 333 aa overlap (16-337:4-336)

               10        20         30        40        50         
pF1KE9 MRAVFIQGAEEHPAAFCYQV-NGSCPRTVHTLGIQLVIYLACAAGMLIIVLGNVFVAFAV
                      ::... : :: ..  .  ..  .:   .  .:  ..::..:  ..
NP_612             MMPFCHNIINISCVKNNWSNDVRASLYSLMVLIILTTLVGNLIVIVSI
                           10        20        30        40        

      60        70        80        90       100       110         
pF1KE9 SYFKALHTPTNFLLLSLALADMFLGLLVLPLSTIRSVESCWFFGDFLCRLHTYLDTLFCL
       :.:: ::::::.:. :.: .:..:: ::.: : .::.: ::.::. .:..::  : ..  
NP_612 SHFKQLHTPTNWLIHSMATVDFLLGCLVMPYSMVRSAEHCWYFGEVFCKIHTSTDIMLSS
       50        60        70        80        90       100        

     120       130       140       150       160       170         
pF1KE9 TSIFHLCFISIDRHCAICDPLLYPSKFTVRVALRYILAGWGVPAAYTSLFLYTDVVETRL
       .::::: ::::::. :.:::: : .:... :   .:. .:.:::...  ... ..     
NP_612 ASIFHLSFISIDRYYAVCDPLRYKAKMNILVICVMIFISWSVPAVFAFGMIFLELNFKGA
      110       120       130       140       150       160        

     180        190       200        210       220       230       
pF1KE9 SQ-WLEEMPCVGSCQLLLNKFWGWLNFPL-FFVPCLIMISLYVKIFVVATRQAQQITTLS
        . . ... : :.:.....:. : :.:   :..:  ::. .: .:...: .::. :.  .
NP_612 EEIYYKHVHCRGGCSVFFSKISGVLTFMTSFYIPGSIMLCVYYRIYLIAKEQARLISDAN
      170       180       190       200       210       220        

       240               250       260       270       280         
pF1KE9 KSLA-------GAAK-HERKAAKTLGIAVGIYLLCWLPFTIDTMVDSLLHFITPPLVFDI
       ..:        : .. .::::.:::::..:..:.:: :: : :..: .::.: :: . :.
NP_612 QKLQIGLEMKNGISQSKERKAVKTLGIVMGVFLICWCPFFICTVMDPFLHYIIPPTLNDV
      230       240       250       260       270       280        

     290       300       310       320       330          
pF1KE9 FIWFAYFNSACNPIIYVFSYQWFRKALKLTLSQKVFSPQTRTVDLYQE   
       .:::.:.::. ::..:.: : :::::::. :  :.:. ..    :. :   
NP_612 LIWFGYLNSTFNPMVYAFFYPWFRKALKMMLFGKIFQKDSSRCKLFLELSS
      290       300       310       320       330         

>>NP_071640 (OMIM: 142703) histamine H2 receptor isoform  (359 aa)
 initn: 432 init1: 321 opt: 538  Z-score: 491.8  bits: 99.5 E(85289): 1.2e-20
Smith-Waterman score: 538; 35.7% identity (66.4% similar) in 283 aa overlap (34-313:18-296)

            10        20        30        40        50        60   
pF1KE9 VFIQGAEEHPAAFCYQVNGSCPRTVHTLGIQLVIYLACAAGMLIIVLGNVFVAFAVSYFK
                                     ...: .. :. .:: : ::: : .::.  .
NP_071              MAPNGTASSFCLDSTACKITITVVLAVLILITVAGNVVVCLAVGLNR
                            10        20        30        40       

            70        80        90       100       110       120   
pF1KE9 ALHTPTNFLLLSLALADMFLGLLVLPLSTIRSVESCWFFGDFLCRLHTYLDTLFCLTSIF
        :.. :: ...:::..:..:::::::.:.: ..   : ::  .: ..: ::...: .::.
NP_071 RLRNLTNCFIVSLAITDLLLGLLVLPFSAIYQLSCKWSFGKVFCNIYTSLDVMLCTASIL
        50        60        70        80        90       100       

           130       140        150       160       170       180  
pF1KE9 HLCFISIDRHCAICDPLLYPSKFT-VRVALRYILAGWGVPAAYTSLFLYTDVVETRLSQW
       .: .::.::.::. ::: ::   : ::::.  .:  : .  . :  ::   .  .  .. 
NP_071 NLFMISLDRYCAVMDPLRYPVLVTPVRVAISLVLI-WVI--SITLSFLSIHLGWNSRNET
       110       120       130       140          150       160    

            190       200        210       220       230       240 
pF1KE9 LEEMPCVGSCQLLLNKFWGWLN-FPLFFVPCLIMISLYVKIFVVATRQAQQITTLSKSLA
        .    ...:.. .:. .: .. .  :..: :::   : .:: ::  ::..:. .: :  
NP_071 SKGNHTTSKCKVQVNEVYGLVDGLVTFYLPLLIMCITYYRIFKVARDQAKRINHIS-SWK
          170       180       190       200       210       220    

             250       260       270       280        290       300
pF1KE9 GAAKHERKAAKTLGIAVGIYLLCWLPFTIDTMVDSLLHFITPPLVFD-IFIWFAYFNSAC
       .:. .:.::. ::. ..: ...::.:.    .  .:    .   :.. : .:..: ::: 
NP_071 AATIREHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSAL
           230       240       250       260       270       280   

              310       320       330                              
pF1KE9 NPIIYVFSYQWFRKALKLTLSQKVFSPQTRTVDLYQE                       
       :::.:.   . ::                                               
NP_071 NPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQ
           290       300       310       320       330       340   

>>XP_006714928 (OMIM: 142703) PREDICTED: histamine H2 re  (362 aa)
 initn: 432 init1: 321 opt: 538  Z-score: 491.8  bits: 99.5 E(85289): 1.2e-20
Smith-Waterman score: 538; 35.7% identity (66.4% similar) in 283 aa overlap (34-313:18-296)

            10        20        30        40        50        60   
pF1KE9 VFIQGAEEHPAAFCYQVNGSCPRTVHTLGIQLVIYLACAAGMLIIVLGNVFVAFAVSYFK
                                     ...: .. :. .:: : ::: : .::.  .
XP_006              MAPNGTASSFCLDSTACKITITVVLAVLILITVAGNVVVCLAVGLNR
                            10        20        30        40       

            70        80        90       100       110       120   
pF1KE9 ALHTPTNFLLLSLALADMFLGLLVLPLSTIRSVESCWFFGDFLCRLHTYLDTLFCLTSIF
        :.. :: ...:::..:..:::::::.:.: ..   : ::  .: ..: ::...: .::.
XP_006 RLRNLTNCFIVSLAITDLLLGLLVLPFSAIYQLSCKWSFGKVFCNIYTSLDVMLCTASIL
        50        60        70        80        90       100       

           130       140        150       160       170       180  
pF1KE9 HLCFISIDRHCAICDPLLYPSKFT-VRVALRYILAGWGVPAAYTSLFLYTDVVETRLSQW
       .: .::.::.::. ::: ::   : ::::.  .:  : .  . :  ::   .  .  .. 
XP_006 NLFMISLDRYCAVMDPLRYPVLVTPVRVAISLVLI-WVI--SITLSFLSIHLGWNSRNET
       110       120       130       140          150       160    

            190       200        210       220       230       240 
pF1KE9 LEEMPCVGSCQLLLNKFWGWLN-FPLFFVPCLIMISLYVKIFVVATRQAQQITTLSKSLA
        .    ...:.. .:. .: .. .  :..: :::   : .:: ::  ::..:. .: :  
XP_006 SKGNHTTSKCKVQVNEVYGLVDGLVTFYLPLLIMCITYYRIFKVARDQAKRINHIS-SWK
          170       180       190       200       210       220    

             250       260       270       280        290       300
pF1KE9 GAAKHERKAAKTLGIAVGIYLLCWLPFTIDTMVDSLLHFITPPLVFD-IFIWFAYFNSAC
       .:. .:.::. ::. ..: ...::.:.    .  .:    .   :.. : .:..: ::: 
XP_006 AATIREHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSAL
           230       240       250       260       270       280   

              310       320       330                              
pF1KE9 NPIIYVFSYQWFRKALKLTLSQKVFSPQTRTVDLYQE                       
       :::.:.   . ::                                               
XP_006 NPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQ
           290       300       310       320       330       340   

>>NP_001124527 (OMIM: 142703) histamine H2 receptor isof  (397 aa)
 initn: 432 init1: 321 opt: 538  Z-score: 491.4  bits: 99.5 E(85289): 1.2e-20
Smith-Waterman score: 538; 35.7% identity (66.4% similar) in 283 aa overlap (34-313:18-296)

            10        20        30        40        50        60   
pF1KE9 VFIQGAEEHPAAFCYQVNGSCPRTVHTLGIQLVIYLACAAGMLIIVLGNVFVAFAVSYFK
                                     ...: .. :. .:: : ::: : .::.  .
NP_001              MAPNGTASSFCLDSTACKITITVVLAVLILITVAGNVVVCLAVGLNR
                            10        20        30        40       

            70        80        90       100       110       120   
pF1KE9 ALHTPTNFLLLSLALADMFLGLLVLPLSTIRSVESCWFFGDFLCRLHTYLDTLFCLTSIF
        :.. :: ...:::..:..:::::::.:.: ..   : ::  .: ..: ::...: .::.
NP_001 RLRNLTNCFIVSLAITDLLLGLLVLPFSAIYQLSCKWSFGKVFCNIYTSLDVMLCTASIL
        50        60        70        80        90       100       

           130       140        150       160       170       180  
pF1KE9 HLCFISIDRHCAICDPLLYPSKFT-VRVALRYILAGWGVPAAYTSLFLYTDVVETRLSQW
       .: .::.::.::. ::: ::   : ::::.  .:  : .  . :  ::   .  .  .. 
NP_001 NLFMISLDRYCAVMDPLRYPVLVTPVRVAISLVLI-WVI--SITLSFLSIHLGWNSRNET
       110       120       130       140          150       160    

            190       200        210       220       230       240 
pF1KE9 LEEMPCVGSCQLLLNKFWGWLN-FPLFFVPCLIMISLYVKIFVVATRQAQQITTLSKSLA
        .    ...:.. .:. .: .. .  :..: :::   : .:: ::  ::..:. .: :  
NP_001 SKGNHTTSKCKVQVNEVYGLVDGLVTFYLPLLIMCITYYRIFKVARDQAKRINHIS-SWK
          170       180       190       200       210       220    

             250       260       270       280        290       300
pF1KE9 GAAKHERKAAKTLGIAVGIYLLCWLPFTIDTMVDSLLHFITPPLVFD-IFIWFAYFNSAC
       .:. .:.::. ::. ..: ...::.:.    .  .:    .   :.. : .:..: ::: 
NP_001 AATIREHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSAL
           230       240       250       260       270       280   

              310       320       330                              
pF1KE9 NPIIYVFSYQWFRKALKLTLSQKVFSPQTRTVDLYQE                       
       :::.:.   . ::                                               
NP_001 NPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQ
           290       300       310       320       330       340   




337 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:29:47 2016 done: Sun Nov  6 16:29:48 2016
 Total Scan time:  7.100 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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