FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2362, 275 aa 1>>>pF1KE2362 275 - 275 aa - 275 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2875+/-0.000384; mu= 15.8053+/- 0.024 mean_var=72.0209+/-14.744, 0's: 0 Z-trim(113.2): 10 B-trim: 308 in 1/52 Lambda= 0.151128 statistics sampled from 22419 (22429) to 22419 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.263), width: 16 Scan time: 6.380 The best scores are: opt bits E(85289) NP_001273035 (OMIM: 604261) autophagy protein 5 is ( 275) 1913 426.1 3.4e-119 NP_004840 (OMIM: 604261) autophagy protein 5 isofo ( 275) 1913 426.1 3.4e-119 NP_001273036 (OMIM: 604261) autophagy protein 5 is ( 197) 1367 307.0 1.8e-83 NP_001273037 (OMIM: 604261) autophagy protein 5 is ( 213) 1117 252.5 4.8e-67 NP_001273040 (OMIM: 604261) autophagy protein 5 is ( 91) 256 64.5 8e-11 >>NP_001273035 (OMIM: 604261) autophagy protein 5 isofor (275 aa) initn: 1913 init1: 1913 opt: 1913 Z-score: 2261.0 bits: 426.1 E(85289): 3.4e-119 Smith-Waterman score: 1913; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275) 10 20 30 40 50 60 pF1KE2 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEEN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 GFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMI 190 200 210 220 230 240 250 260 270 pF1KE2 HGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD ::::::::::::::::::::::::::::::::::: NP_001 HGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD 250 260 270 >>NP_004840 (OMIM: 604261) autophagy protein 5 isoform a (275 aa) initn: 1913 init1: 1913 opt: 1913 Z-score: 2261.0 bits: 426.1 E(85289): 3.4e-119 Smith-Waterman score: 1913; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275) 10 20 30 40 50 60 pF1KE2 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEEN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 GFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 GFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMI 190 200 210 220 230 240 250 260 270 pF1KE2 HGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD ::::::::::::::::::::::::::::::::::: NP_004 HGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD 250 260 270 >>NP_001273036 (OMIM: 604261) autophagy protein 5 isofor (197 aa) initn: 1367 init1: 1367 opt: 1367 Z-score: 1619.7 bits: 307.0 E(85289): 1.8e-83 Smith-Waterman score: 1367; 100.0% identity (100.0% similar) in 196 aa overlap (80-275:2-197) 50 60 70 80 90 100 pF1KE2 DKVKKHFQKVMRQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPE :::::::::::::::::::::::::::::: NP_001 MHYPIGLLFDLLASSSALPWNITVHFKSFPE 10 20 30 110 120 130 140 150 160 pF1KE2 KDLLHCPSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KDLLHCPSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAIN 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE2 RKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDP 100 110 120 130 140 150 230 240 250 260 270 pF1KE2 EDGEKKNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD :::::::::::::::::::::::::::::::::::::::::::::: NP_001 EDGEKKNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD 160 170 180 190 >>NP_001273037 (OMIM: 604261) autophagy protein 5 isofor (213 aa) initn: 1111 init1: 1111 opt: 1117 Z-score: 1324.6 bits: 252.5 E(85289): 4.8e-67 Smith-Waterman score: 1117; 82.0% identity (88.3% similar) in 205 aa overlap (1-199:1-203) 10 20 30 40 50 60 pF1KE2 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQND------RFDQFWAINRKLME :::::::::::::::::::::::::::::::::::::::: . . : : .: :. NP_001 IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDLTSFGPSIGNSWNILQKKMD 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE2 YPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEK . . ..:: :. . . . :. NP_001 FVI--SPLEYIRQRLKDLSFRSCFVLWLQMDSCTH 190 200 210 >>NP_001273040 (OMIM: 604261) autophagy protein 5 isofor (91 aa) initn: 269 init1: 256 opt: 256 Z-score: 315.3 bits: 64.5 E(85289): 8e-11 Smith-Waterman score: 256; 100.0% identity (100.0% similar) in 36 aa overlap (1-36:1-36) 10 20 30 40 50 60 pF1KE2 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM :::::::::::::::::::::::::::::::::::: NP_001 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYTDLTSFGPSIGNSWNILQKKMDFV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA NP_001 ISPLEYIRQRLKDLSFRSCFVLWLQMDSCTH 70 80 90 275 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 16:31:42 2016 done: Sun Nov 6 16:31:43 2016 Total Scan time: 6.380 Total Display time: -0.050 Function used was FASTA [36.3.4 Apr, 2011]