FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1647, 163 aa
  1>>>pF1KE1647 163 - 163 aa - 163 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4001+/-0.000627; mu= 11.7785+/- 0.038
 mean_var=61.8853+/-12.131, 0's: 0 Z-trim(111.1): 10  B-trim: 83 in 1/49
 Lambda= 0.163035
 statistics sampled from 12075 (12083) to 12075 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.371), width:  16
 Scan time:  1.710

The best scores are:                                      opt bits E(32554)
CCDS4938.1 IL17F gene_id:112744|Hs108|chr6         ( 163) 1102 266.9 3.9e-72
CCDS4937.1 IL17A gene_id:3605|Hs108|chr6           ( 155)  431 109.1 1.2e-24


>>CCDS4938.1 IL17F gene_id:112744|Hs108|chr6              (163 aa)
 initn: 1102 init1: 1102 opt: 1102  Z-score: 1408.6  bits: 266.9 E(32554): 3.9e-72
Smith-Waterman score: 1102; 100.0% identity (100.0% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KE1 MTVKTLHGPAMVKYLLLSILGLAFLSEAAARKIPKVGHTFFQKPESCPPVPGGSMKLDIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 MTVKTLHGPAMVKYLLLSILGLAFLSEAAARKIPKVGHTFFQKPESCPPVPGGSMKLDIG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 IINENQRVSMSRNIESRSTSPWNYTVTWDPNRYPSEVVQAQCRNLGCINAQGKEDISMNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 IINENQRVSMSRNIESRSTSPWNYTVTWDPNRYPSEVVQAQCRNLGCINAQGKEDISMNS
               70        80        90       100       110       120

              130       140       150       160   
pF1KE1 VPIQQETLVVRRKHQGCSVSFQLEKVLVTVGCTCVTPVIHHVQ
       :::::::::::::::::::::::::::::::::::::::::::
CCDS49 VPIQQETLVVRRKHQGCSVSFQLEKVLVTVGCTCVTPVIHHVQ
              130       140       150       160   

>>CCDS4937.1 IL17A gene_id:3605|Hs108|chr6                (155 aa)
 initn: 411 init1: 411 opt: 431  Z-score: 556.0  bits: 109.1 E(32554): 1.2e-24
Smith-Waterman score: 431; 49.0% identity (68.2% similar) in 151 aa overlap (18-162:7-154)

               10        20        30        40             50     
pF1KE1 MTVKTLHGPAMVKYLLLSILGLAFLSEAAARKIPKVGHTFFQKPESCPP-----VPGGSM
                        :...: .:    :  : :.: :. ..: .::       :   :
CCDS49            MTPGKTSLVSLLLLLSLEA--IVKAGITIPRNP-GCPNSEDKNFPRTVM
                          10          20        30         40      

           60        70        80        90       100       110    
pF1KE1 -KLDIGIINENQRVSMSRNIESRSTSPWNYTVTWDPNRYPSEVVQAQCRNLGCINAQGKE
        .:.:   : :   . : .  .:::::::   . ::.:::: . .:.::.::::::.:. 
CCDS49 VNLNIHNRNTNTNPKRSSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNV
         50        60        70        80        90       100      

          120       130       140       150       160   
pF1KE1 DISMNSVPIQQETLVVRRKHQGCSVSFQLEKVLVTVGCTCVTPVIHHVQ
       :  ::::::::: ::.::.   :  ::.:::.::.::::::::..::: 
CCDS49 DYHMNSVPIQQEILVLRREPPHCPNSFRLEKILVSVGCTCVTPIVHHVA
        110       120       130       140       150     




163 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:47:58 2016 done: Sun Nov  6 16:47:59 2016
 Total Scan time:  1.710 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]