FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2148, 152 aa 1>>>pF1KE2148 152 - 152 aa - 152 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0595+/-0.000349; mu= 13.8066+/- 0.022 mean_var=70.3660+/-14.337, 0's: 0 Z-trim(114.2): 10 B-trim: 33 in 1/54 Lambda= 0.152895 statistics sampled from 23946 (23949) to 23946 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.281), width: 16 Scan time: 5.060 The best scores are: opt bits E(85289) NP_072045 (OMIM: 180473) 40S ribosomal protein S18 ( 152) 995 228.0 4.6e-60 >>NP_072045 (OMIM: 180473) 40S ribosomal protein S18 [Ho (152 aa) initn: 995 init1: 995 opt: 995 Z-score: 1199.3 bits: 228.0 E(85289): 4.6e-60 Smith-Waterman score: 995; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152) 10 20 30 40 50 60 pF1KE2 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_072 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_072 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 70 80 90 100 110 120 130 140 150 pF1KE2 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK :::::::::::::::::::::::::::::::: NP_072 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 130 140 150 152 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 16:50:48 2016 done: Sun Nov 6 16:50:48 2016 Total Scan time: 5.060 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]