FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2148, 152 aa
  1>>>pF1KE2148 152 - 152 aa - 152 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1704+/-0.000842; mu= 13.1574+/- 0.050
 mean_var=68.3498+/-13.903, 0's: 0 Z-trim(107.5): 11  B-trim: 209 in 1/50
 Lambda= 0.155133
 statistics sampled from 9630 (9634) to 9630 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.296), width:  16
 Scan time:  1.730

The best scores are:                                      opt bits E(32554)
CCDS4771.1 RPS18 gene_id:6222|Hs108|chr6           ( 152)  995 231.0 2.2e-61


>>CCDS4771.1 RPS18 gene_id:6222|Hs108|chr6                (152 aa)
 initn: 995 init1: 995 opt: 995  Z-score: 1215.7  bits: 231.0 E(32554): 2.2e-61
Smith-Waterman score: 995; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)

               10        20        30        40        50        60
pF1KE2 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH
               70        80        90       100       110       120

              130       140       150  
pF1KE2 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK
       ::::::::::::::::::::::::::::::::
CCDS47 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK
              130       140       150  




152 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:50:47 2016 done: Sun Nov  6 16:50:47 2016
 Total Scan time:  1.730 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]