FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1709, 215 aa 1>>>pF1KE1709 215 - 215 aa - 215 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7808+/-0.000336; mu= 17.3776+/- 0.021 mean_var=68.7421+/-13.723, 0's: 0 Z-trim(115.8): 18 B-trim: 0 in 0/49 Lambda= 0.154690 statistics sampled from 26536 (26554) to 26536 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.311), width: 16 Scan time: 5.900 The best scores are: opt bits E(85289) NP_001311 (OMIM: 115441) casein kinase II subunit ( 215) 1519 347.4 1e-95 NP_001269314 (OMIM: 115441) casein kinase II subun ( 212) 1485 339.8 2e-93 >>NP_001311 (OMIM: 115441) casein kinase II subunit beta (215 aa) initn: 1519 init1: 1519 opt: 1519 Z-score: 1839.3 bits: 347.4 E(85289): 1e-95 Smith-Waterman score: 1519; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215) 10 20 30 40 50 60 pF1KE1 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPML 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 PIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPA 130 140 150 160 170 180 190 200 210 pF1KE1 NQFVPRLYGFKIHPMAYQLQLQAASNFKSPVKTIR ::::::::::::::::::::::::::::::::::: NP_001 NQFVPRLYGFKIHPMAYQLQLQAASNFKSPVKTIR 190 200 210 >>NP_001269314 (OMIM: 115441) casein kinase II subunit b (212 aa) initn: 855 init1: 855 opt: 1485 Z-score: 1798.3 bits: 339.8 E(85289): 2e-93 Smith-Waterman score: 1485; 98.6% identity (98.6% similar) in 215 aa overlap (1-215:1-212) 10 20 30 40 50 60 pF1KE1 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPML 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 PIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPA :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PI---DIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPA 130 140 150 160 170 190 200 210 pF1KE1 NQFVPRLYGFKIHPMAYQLQLQAASNFKSPVKTIR ::::::::::::::::::::::::::::::::::: NP_001 NQFVPRLYGFKIHPMAYQLQLQAASNFKSPVKTIR 180 190 200 210 215 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 16:52:01 2016 done: Sun Nov 6 16:52:02 2016 Total Scan time: 5.900 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]